miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 5' -54.3 NC_002794.1 + 91861 0.66 0.972511
Target:  5'- aGUUCgaggGUCCCGGGGGuGg--CGGcGGCGg -3'
miRNA:   3'- -CGAG----UAGGGCCUCCuCauaGUC-UCGC- -5'
10770 5' -54.3 NC_002794.1 + 157988 0.66 0.969689
Target:  5'- cGCUCAUUugaccggagCCGGuGGGGUggCGGAucaGCGa -3'
miRNA:   3'- -CGAGUAG---------GGCCuCCUCAuaGUCU---CGC- -5'
10770 5' -54.3 NC_002794.1 + 181055 0.66 0.966666
Target:  5'- aGCUCGUCUCGGAGaacgcggGUCcGGGCa -3'
miRNA:   3'- -CGAGUAGGGCCUCcuca---UAGuCUCGc -5'
10770 5' -54.3 NC_002794.1 + 152207 0.67 0.952455
Target:  5'- cGUUCcgCCCGGAGGc--GUCGGAcgucGCGc -3'
miRNA:   3'- -CGAGuaGGGCCUCCucaUAGUCU----CGC- -5'
10770 5' -54.3 NC_002794.1 + 115545 0.68 0.929622
Target:  5'- -gUCGUCCagcuCGGGGGAGUAgccGAGCa -3'
miRNA:   3'- cgAGUAGG----GCCUCCUCAUaguCUCGc -5'
10770 5' -54.3 NC_002794.1 + 40062 0.68 0.924356
Target:  5'- cGCUgA-CUCGGGGGAGggaaacCGGGGCGg -3'
miRNA:   3'- -CGAgUaGGGCCUCCUCaua---GUCUCGC- -5'
10770 5' -54.3 NC_002794.1 + 49770 0.69 0.894527
Target:  5'- cGCUCGUcucCCCGGAGGcGGUugggCAcGAGCc -3'
miRNA:   3'- -CGAGUA---GGGCCUCC-UCAua--GU-CUCGc -5'
10770 5' -54.3 NC_002794.1 + 114512 0.69 0.894527
Target:  5'- --cCGUCCCGGAGcGAGUc---GAGCGg -3'
miRNA:   3'- cgaGUAGGGCCUC-CUCAuaguCUCGC- -5'
10770 5' -54.3 NC_002794.1 + 119271 0.69 0.893872
Target:  5'- uGCUCGUaCUGGAGG-GUGUuguggaaccaggcCAGGGCGa -3'
miRNA:   3'- -CGAGUAgGGCCUCCuCAUA-------------GUCUCGC- -5'
10770 5' -54.3 NC_002794.1 + 152629 0.7 0.873911
Target:  5'- cGCUCGUCCUGGGcGGcGU-UC-GAGCGg -3'
miRNA:   3'- -CGAGUAGGGCCU-CCuCAuAGuCUCGC- -5'
10770 5' -54.3 NC_002794.1 + 34832 0.7 0.866607
Target:  5'- cCUCGccggCgCCGGAGcGGGcGUCGGAGCGg -3'
miRNA:   3'- cGAGUa---G-GGCCUC-CUCaUAGUCUCGC- -5'
10770 5' -54.3 NC_002794.1 + 149446 0.7 0.843479
Target:  5'- gGCUCgAUCUCGGggaAGGGGgcgGUCgaGGAGCGa -3'
miRNA:   3'- -CGAG-UAGGGCC---UCCUCa--UAG--UCUCGC- -5'
10770 5' -54.3 NC_002794.1 + 115609 0.71 0.836201
Target:  5'- cGCUCG-CCCGGcgccGGGAGgcgggucaggugguUCAGGGCGu -3'
miRNA:   3'- -CGAGUaGGGCC----UCCUCau------------AGUCUCGC- -5'
10770 5' -54.3 NC_002794.1 + 66971 0.72 0.755302
Target:  5'- cGCUCG--CCGGGGGAGcGUCGcGAGCa -3'
miRNA:   3'- -CGAGUagGGCCUCCUCaUAGU-CUCGc -5'
10770 5' -54.3 NC_002794.1 + 97402 1.12 0.003851
Target:  5'- gGCUCAUCCCGGAGGAGUAUCAGAGCGg -3'
miRNA:   3'- -CGAGUAGGGCCUCCUCAUAGUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.