Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10770 | 5' | -54.3 | NC_002794.1 | + | 34832 | 0.7 | 0.866607 |
Target: 5'- cCUCGccggCgCCGGAGcGGGcGUCGGAGCGg -3' miRNA: 3'- cGAGUa---G-GGCCUC-CUCaUAGUCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 40062 | 0.68 | 0.924356 |
Target: 5'- cGCUgA-CUCGGGGGAGggaaacCGGGGCGg -3' miRNA: 3'- -CGAgUaGGGCCUCCUCaua---GUCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 49770 | 0.69 | 0.894527 |
Target: 5'- cGCUCGUcucCCCGGAGGcGGUugggCAcGAGCc -3' miRNA: 3'- -CGAGUA---GGGCCUCC-UCAua--GU-CUCGc -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 66971 | 0.72 | 0.755302 |
Target: 5'- cGCUCG--CCGGGGGAGcGUCGcGAGCa -3' miRNA: 3'- -CGAGUagGGCCUCCUCaUAGU-CUCGc -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 91861 | 0.66 | 0.972511 |
Target: 5'- aGUUCgaggGUCCCGGGGGuGg--CGGcGGCGg -3' miRNA: 3'- -CGAG----UAGGGCCUCCuCauaGUC-UCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 97402 | 1.12 | 0.003851 |
Target: 5'- gGCUCAUCCCGGAGGAGUAUCAGAGCGg -3' miRNA: 3'- -CGAGUAGGGCCUCCUCAUAGUCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 114512 | 0.69 | 0.894527 |
Target: 5'- --cCGUCCCGGAGcGAGUc---GAGCGg -3' miRNA: 3'- cgaGUAGGGCCUC-CUCAuaguCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 115545 | 0.68 | 0.929622 |
Target: 5'- -gUCGUCCagcuCGGGGGAGUAgccGAGCa -3' miRNA: 3'- cgAGUAGG----GCCUCCUCAUaguCUCGc -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 115609 | 0.71 | 0.836201 |
Target: 5'- cGCUCG-CCCGGcgccGGGAGgcgggucaggugguUCAGGGCGu -3' miRNA: 3'- -CGAGUaGGGCC----UCCUCau------------AGUCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 119271 | 0.69 | 0.893872 |
Target: 5'- uGCUCGUaCUGGAGG-GUGUuguggaaccaggcCAGGGCGa -3' miRNA: 3'- -CGAGUAgGGCCUCCuCAUA-------------GUCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 149446 | 0.7 | 0.843479 |
Target: 5'- gGCUCgAUCUCGGggaAGGGGgcgGUCgaGGAGCGa -3' miRNA: 3'- -CGAG-UAGGGCC---UCCUCa--UAG--UCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 152207 | 0.67 | 0.952455 |
Target: 5'- cGUUCcgCCCGGAGGc--GUCGGAcgucGCGc -3' miRNA: 3'- -CGAGuaGGGCCUCCucaUAGUCU----CGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 152629 | 0.7 | 0.873911 |
Target: 5'- cGCUCGUCCUGGGcGGcGU-UC-GAGCGg -3' miRNA: 3'- -CGAGUAGGGCCU-CCuCAuAGuCUCGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 157988 | 0.66 | 0.969689 |
Target: 5'- cGCUCAUUugaccggagCCGGuGGGGUggCGGAucaGCGa -3' miRNA: 3'- -CGAGUAG---------GGCCuCCUCAuaGUCU---CGC- -5' |
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10770 | 5' | -54.3 | NC_002794.1 | + | 181055 | 0.66 | 0.966666 |
Target: 5'- aGCUCGUCUCGGAGaacgcggGUCcGGGCa -3' miRNA: 3'- -CGAGUAGGGCCUCcuca---UAGuCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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