miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10771 3' -56.6 NC_002794.1 + 104484 0.66 0.938366
Target:  5'- uGCGGGCG-GCCacgGcGGccGGGUCgGGCGa -3'
miRNA:   3'- -UGCCCGCaUGGa--C-CUuuCCCAG-CUGC- -5'
10771 3' -56.6 NC_002794.1 + 180703 0.66 0.92864
Target:  5'- gGCGGGCGgACCaUGGcucGGGUUcagaGACGc -3'
miRNA:   3'- -UGCCCGCaUGG-ACCuuuCCCAG----CUGC- -5'
10771 3' -56.6 NC_002794.1 + 53845 0.66 0.918013
Target:  5'- gACGGGCGU-CUcGGc-GGGGuucUCGACGa -3'
miRNA:   3'- -UGCCCGCAuGGaCCuuUCCC---AGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 95797 0.66 0.918013
Target:  5'- gGCGcGGCGgaggaACCgGGGGAGcGG-CGGCGg -3'
miRNA:   3'- -UGC-CCGCa----UGGaCCUUUC-CCaGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 98932 0.67 0.906489
Target:  5'- cUGGGCGcgGCCgGGAAGGGGcUGGgGc -3'
miRNA:   3'- uGCCCGCa-UGGaCCUUUCCCaGCUgC- -5'
10771 3' -56.6 NC_002794.1 + 42598 0.67 0.900395
Target:  5'- gGCGcGGCG-GCCgGGAgcGGGcucucUCGACGa -3'
miRNA:   3'- -UGC-CCGCaUGGaCCUuuCCC-----AGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 148131 0.67 0.894081
Target:  5'- uCGGGCGcgggGCCgccggGGcGAGGGcggucgCGACGg -3'
miRNA:   3'- uGCCCGCa---UGGa----CCuUUCCCa-----GCUGC- -5'
10771 3' -56.6 NC_002794.1 + 147075 0.67 0.894081
Target:  5'- cGCGGGCGcccgguCCaaGGAcgAAGGcGUCGGCGc -3'
miRNA:   3'- -UGCCCGCau----GGa-CCU--UUCC-CAGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 92318 0.68 0.880809
Target:  5'- cGCGGGCGgcggggGCCcgGGcgGGcGGcUCGGCGu -3'
miRNA:   3'- -UGCCCGCa-----UGGa-CCuuUC-CC-AGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 140148 0.68 0.876663
Target:  5'- gACGaGGCGgucGCgcaguauuuacgauuUUGGAucGGGUCGGCGa -3'
miRNA:   3'- -UGC-CCGCa--UG---------------GACCUuuCCCAGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 41956 0.68 0.851804
Target:  5'- gGCGuGCGcgGCCUGGAA--GGUCGGCu -3'
miRNA:   3'- -UGCcCGCa-UGGACCUUucCCAGCUGc -5'
10771 3' -56.6 NC_002794.1 + 120995 0.68 0.84407
Target:  5'- aGCGgcGGCGgGCCaUGGccGAGGGUCGGCc -3'
miRNA:   3'- -UGC--CCGCaUGG-ACCu-UUCCCAGCUGc -5'
10771 3' -56.6 NC_002794.1 + 55322 0.69 0.836154
Target:  5'- cGCGGGCGgcuuCCgaGGAcccGGGGUCG-CGc -3'
miRNA:   3'- -UGCCCGCau--GGa-CCUu--UCCCAGCuGC- -5'
10771 3' -56.6 NC_002794.1 + 146746 0.69 0.836154
Target:  5'- gACGGGCcgcggAUCgGGGGAGGGaCGAUGg -3'
miRNA:   3'- -UGCCCGca---UGGaCCUUUCCCaGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 129237 0.69 0.828063
Target:  5'- aACGGGCGgcuCCggcGGAcucGGGUCGAgCGc -3'
miRNA:   3'- -UGCCCGCau-GGa--CCUuu-CCCAGCU-GC- -5'
10771 3' -56.6 NC_002794.1 + 102072 0.69 0.828063
Target:  5'- cCGGGCG-ACCUGccgcGGGcCGACGa -3'
miRNA:   3'- uGCCCGCaUGGACcuuuCCCaGCUGC- -5'
10771 3' -56.6 NC_002794.1 + 88724 0.69 0.819805
Target:  5'- -gGGGCGgugACCUcGGAugaccucGGGGUCGcCGa -3'
miRNA:   3'- ugCCCGCa--UGGA-CCUu------UCCCAGCuGC- -5'
10771 3' -56.6 NC_002794.1 + 149836 0.7 0.78524
Target:  5'- gACGGGCGgggACgaGGAcGGGGaCGAgGa -3'
miRNA:   3'- -UGCCCGCa--UGgaCCUuUCCCaGCUgC- -5'
10771 3' -56.6 NC_002794.1 + 178264 0.71 0.739181
Target:  5'- aGCGGGCugACC-GGAGacGGGGUCGGuCGa -3'
miRNA:   3'- -UGCCCGcaUGGaCCUU--UCCCAGCU-GC- -5'
10771 3' -56.6 NC_002794.1 + 86821 0.71 0.710423
Target:  5'- -aGGGCcgcgACCUcgccgGGAucGGGUCGGCGg -3'
miRNA:   3'- ugCCCGca--UGGA-----CCUuuCCCAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.