miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10771 5' -55 NC_002794.1 + 191526 0.66 0.959995
Target:  5'- gGGCGUcGGCCcgcGCCUCCcgccGCAGU-CGGg -3'
miRNA:   3'- -CUGCAaCUGG---CGGAGGa---CGUCAuGCU- -5'
10771 5' -55 NC_002794.1 + 137594 0.66 0.959995
Target:  5'- uGCGggGAgCCGCCgCCgGCGGUcGCGGc -3'
miRNA:   3'- cUGCaaCU-GGCGGaGGaCGUCA-UGCU- -5'
10771 5' -55 NC_002794.1 + 33582 0.66 0.94835
Target:  5'- gGugGUgGACCGCCUgCgGCGG-ACGc -3'
miRNA:   3'- -CugCAaCUGGCGGAgGaCGUCaUGCu -5'
10771 5' -55 NC_002794.1 + 70853 0.66 0.94835
Target:  5'- cGACGUgccGGCCuCCUCCggcggcgGCAGcgGCGGc -3'
miRNA:   3'- -CUGCAa--CUGGcGGAGGa------CGUCa-UGCU- -5'
10771 5' -55 NC_002794.1 + 81738 0.67 0.929622
Target:  5'- cGACGUccaGAgCGUCUCCUGCAucGCGc -3'
miRNA:   3'- -CUGCAa--CUgGCGGAGGACGUcaUGCu -5'
10771 5' -55 NC_002794.1 + 107785 0.67 0.929622
Target:  5'- cGGCGacGACCGCgUCCgcgcGCAuUGCGAa -3'
miRNA:   3'- -CUGCaaCUGGCGgAGGa---CGUcAUGCU- -5'
10771 5' -55 NC_002794.1 + 110274 0.67 0.924356
Target:  5'- cGACGgcGGCCGCCgUCCU-CGGgccCGAg -3'
miRNA:   3'- -CUGCaaCUGGCGG-AGGAcGUCau-GCU- -5'
10771 5' -55 NC_002794.1 + 182025 0.68 0.909567
Target:  5'- cGGCGUccgGGCCGCCggcgaccagaccaggUCCUGCGcGUAgGGc -3'
miRNA:   3'- -CUGCAa--CUGGCGG---------------AGGACGU-CAUgCU- -5'
10771 5' -55 NC_002794.1 + 138465 0.68 0.907152
Target:  5'- cGACGUggacgUGACCGUCUCgucgGCGGUcccgGCGGg -3'
miRNA:   3'- -CUGCA-----ACUGGCGGAGga--CGUCA----UGCU- -5'
10771 5' -55 NC_002794.1 + 38580 0.69 0.866607
Target:  5'- cGACGgagucGGCCGCCUCCUccCGG-ACGAg -3'
miRNA:   3'- -CUGCaa---CUGGCGGAGGAc-GUCaUGCU- -5'
10771 5' -55 NC_002794.1 + 153616 0.7 0.810039
Target:  5'- cGGCGcgGGCCGCCUaucCCUGguGgcACGAu -3'
miRNA:   3'- -CUGCaaCUGGCGGA---GGACguCa-UGCU- -5'
10771 5' -55 NC_002794.1 + 62399 0.71 0.792337
Target:  5'- cGAC--UGACCGCCUcggaCCUGCGGUggcacccgaucACGAg -3'
miRNA:   3'- -CUGcaACUGGCGGA----GGACGUCA-----------UGCU- -5'
10771 5' -55 NC_002794.1 + 152583 0.72 0.726374
Target:  5'- cGCGgcGGCCGCCacgucCCUGCGGcGCGGg -3'
miRNA:   3'- cUGCaaCUGGCGGa----GGACGUCaUGCU- -5'
10771 5' -55 NC_002794.1 + 99763 0.74 0.62609
Target:  5'- cGACGUUG-CCGCCgCCcGCGGUGCc- -3'
miRNA:   3'- -CUGCAACuGGCGGaGGaCGUCAUGcu -5'
10771 5' -55 NC_002794.1 + 96128 1.09 0.0048
Target:  5'- cGACGUUGACCGCCUCCUGCAGUACGAc -3'
miRNA:   3'- -CUGCAACUGGCGGAGGACGUCAUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.