miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 64863 0.66 0.999755
Target:  5'- cUCGACGuGCcGCucgACGAGGACGaagACGAg -3'
miRNA:   3'- aAGUUGUuCGaCG---UGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 103581 0.66 0.999755
Target:  5'- -cCGACGAGCaGCGguCGGGcaGGCAGCGGc -3'
miRNA:   3'- aaGUUGUUCGaCGU--GCUC--UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 80582 0.66 0.999689
Target:  5'- -aCGcACGGGCUGacggACGAGAACcuGACGGa -3'
miRNA:   3'- aaGU-UGUUCGACg---UGCUCUUG--UUGCU- -5'
10772 5' -48.3 NC_002794.1 + 79440 0.66 0.999689
Target:  5'- -gCGGCGgcGGCgaccgGCGCGGaGACGACGAc -3'
miRNA:   3'- aaGUUGU--UCGa----CGUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 94772 0.66 0.999689
Target:  5'- gUCGACGAggcGCUGgGCGAguucGAGCGGCa- -3'
miRNA:   3'- aAGUUGUU---CGACgUGCU----CUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 101637 0.66 0.999689
Target:  5'- gUCcGCGAGCgUGgGCGGGcgGGCGGCGGu -3'
miRNA:   3'- aAGuUGUUCG-ACgUGCUC--UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 176936 0.66 0.999689
Target:  5'- aUCGugGccGCUGagugaaACGGGGGCAGCGGg -3'
miRNA:   3'- aAGUugUu-CGACg-----UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 136134 0.66 0.999607
Target:  5'- gUCGAaGAGgaGgGCGAGGACGgggGCGAa -3'
miRNA:   3'- aAGUUgUUCgaCgUGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 51036 0.66 0.999607
Target:  5'- -gCAACAGGCUauucaucccGUcCGAGAcgGCGGCGAc -3'
miRNA:   3'- aaGUUGUUCGA---------CGuGCUCU--UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 47445 0.66 0.999607
Target:  5'- uUUCAGgAcGggGCACGAG-ACGACGAu -3'
miRNA:   3'- -AAGUUgUuCgaCGUGCUCuUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 153400 0.66 0.999607
Target:  5'- aUC-GCGAGCUGuCGCGAGcGCcGCGc -3'
miRNA:   3'- aAGuUGUUCGAC-GUGCUCuUGuUGCu -5'
10772 5' -48.3 NC_002794.1 + 142216 0.66 0.999607
Target:  5'- -gCGGCAgcGGCgGUGCGGGgAGCGGCGGa -3'
miRNA:   3'- aaGUUGU--UCGaCGUGCUC-UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 139456 0.66 0.999607
Target:  5'- aUCGGCAGGUcgucgUGCGCcAGGACggUGGu -3'
miRNA:   3'- aAGUUGUUCG-----ACGUGcUCUUGuuGCU- -5'
10772 5' -48.3 NC_002794.1 + 107109 0.66 0.999549
Target:  5'- gUCGcuGCGAGCcGCgcuucuuugaccgcgACGGGAACGACGu -3'
miRNA:   3'- aAGU--UGUUCGaCG---------------UGCUCUUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 106312 0.66 0.999507
Target:  5'- -aCGACGAGCgcgacgcGCGCGAcGGGuCGACGGu -3'
miRNA:   3'- aaGUUGUUCGa------CGUGCU-CUU-GUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 86933 0.66 0.999507
Target:  5'- --gGGCAGGCgGgGCGGGAucCGGCGAg -3'
miRNA:   3'- aagUUGUUCGaCgUGCUCUu-GUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 114541 0.66 0.999473
Target:  5'- ---cGCGAGCUGCGCGAGcuGuucuucggccaggcGCAGCGu -3'
miRNA:   3'- aaguUGUUCGACGUGCUC--U--------------UGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 96444 0.66 0.999385
Target:  5'- cUCAACGAGCUGCAgaaaggcuucUGGGcuCAcguGCGGg -3'
miRNA:   3'- aAGUUGUUCGACGU----------GCUCuuGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 142607 0.66 0.999385
Target:  5'- --uGACGAGCUggcGCACGGGcgaguACAGCGc -3'
miRNA:   3'- aagUUGUUCGA---CGUGCUCu----UGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 84278 0.66 0.999385
Target:  5'- aUUCcGC-AGCUGCcgACgGGGAGCGGCGGc -3'
miRNA:   3'- -AAGuUGuUCGACG--UG-CUCUUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.