Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10772 | 5' | -48.3 | NC_002794.1 | + | 142216 | 0.66 | 0.999607 |
Target: 5'- -gCGGCAgcGGCgGUGCGGGgAGCGGCGGa -3' miRNA: 3'- aaGUUGU--UCGaCGUGCUC-UUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 125692 | 0.67 | 0.99883 |
Target: 5'- -gCGACGuguuGCUGCGCGugacgguGGAGCGgaGCGAa -3' miRNA: 3'- aaGUUGUu---CGACGUGC-------UCUUGU--UGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 149835 | 0.67 | 0.998605 |
Target: 5'- --gGACGGGCggGgACGAGGACGgggACGAg -3' miRNA: 3'- aagUUGUUCGa-CgUGCUCUUGU---UGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 98736 | 0.67 | 0.998605 |
Target: 5'- ----uCGAGCcGCugGAGAACAcCGAc -3' miRNA: 3'- aaguuGUUCGaCGugCUCUUGUuGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 57182 | 0.67 | 0.998313 |
Target: 5'- cUUCGugcuGCAGacGCUGCGCGAGcACAGCc- -3' miRNA: 3'- -AAGU----UGUU--CGACGUGCUCuUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 127322 | 0.67 | 0.998523 |
Target: 5'- cUCGACGAcggagacgagcgccGCUGC-CGAGAcgcucGCGGCGGc -3' miRNA: 3'- aAGUUGUU--------------CGACGuGCUCU-----UGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 51864 | 0.67 | 0.998605 |
Target: 5'- aUUCGACAucuuccGCUacaGCACGAuGAACAACa- -3' miRNA: 3'- -AAGUUGUu-----CGA---CGUGCU-CUUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 19449 | 0.67 | 0.998313 |
Target: 5'- ----cCGAGCggGCACGAGcGGCGGCGGc -3' miRNA: 3'- aaguuGUUCGa-CGUGCUC-UUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 124895 | 0.67 | 0.998605 |
Target: 5'- -aCGGCcagGAGCUGgucCGCGAGAcCGGCGAg -3' miRNA: 3'- aaGUUG---UUCGAC---GUGCUCUuGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 190983 | 0.67 | 0.999063 |
Target: 5'- --gAGCAGGCaGCGCGGcGACGGCGu -3' miRNA: 3'- aagUUGUUCGaCGUGCUcUUGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 106262 | 0.67 | 0.999206 |
Target: 5'- -cCGGCGAGCgccGCGCGucgcgccgccucGGACGGCGAg -3' miRNA: 3'- aaGUUGUUCGa--CGUGCu-----------CUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 118248 | 0.67 | 0.999238 |
Target: 5'- gUCGGCGGGCUGgAgGucggccGGGGCGGCGGc -3' miRNA: 3'- aAGUUGUUCGACgUgC------UCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 40642 | 0.67 | 0.999238 |
Target: 5'- ---cGCGAGCUGaGCGGGcAGCGACGu -3' miRNA: 3'- aaguUGUUCGACgUGCUC-UUGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 57822 | 0.67 | 0.999063 |
Target: 5'- cUCGACGgccaGGCcuacaGCACGcuGGACAACGAg -3' miRNA: 3'- aAGUUGU----UCGa----CGUGCu-CUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 142174 | 0.67 | 0.999063 |
Target: 5'- -gCAGCGucGGCaGCGCGAGgAGCGGCa- -3' miRNA: 3'- aaGUUGU--UCGaCGUGCUC-UUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 91195 | 0.67 | 0.999063 |
Target: 5'- -cCGGCGAcGCUGUuCGcGGACGGCGAc -3' miRNA: 3'- aaGUUGUU-CGACGuGCuCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 106428 | 0.67 | 0.999063 |
Target: 5'- cUCAugGcGCUGUugGAGAA-GGCGGu -3' miRNA: 3'- aAGUugUuCGACGugCUCUUgUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 40110 | 0.68 | 0.997971 |
Target: 5'- -aCGACGggGGC-GCGCGAGAGCGGaGAg -3' miRNA: 3'- aaGUUGU--UCGaCGUGCUCUUGUUgCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 17998 | 0.68 | 0.997971 |
Target: 5'- -cCGGCGAGUacUACGAGGACGGCGu -3' miRNA: 3'- aaGUUGUUCGacGUGCUCUUGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 33180 | 0.68 | 0.997858 |
Target: 5'- cUUCuACGGGCUGUGCGuGAaauuguuuaacaguGCGACGGu -3' miRNA: 3'- -AAGuUGUUCGACGUGCuCU--------------UGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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