Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10772 | 5' | -48.3 | NC_002794.1 | + | 95670 | 1.08 | 0.021269 |
Target: 5'- cUUCAACAAGCUGCACGAGAACAACGAg -3' miRNA: 3'- -AAGUUGUUCGACGUGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 84365 | 0.79 | 0.708921 |
Target: 5'- gUCGACGccgacAGCgGCAcCGAGAGCAGCGAa -3' miRNA: 3'- aAGUUGU-----UCGaCGU-GCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 144320 | 0.78 | 0.770488 |
Target: 5'- ----cCGAGCUGuUACGAGAGCGACGAc -3' miRNA: 3'- aaguuGUUCGAC-GUGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 9036 | 0.77 | 0.818124 |
Target: 5'- -gCAACcGGCUGgACGAGAuCAACGAg -3' miRNA: 3'- aaGUUGuUCGACgUGCUCUuGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 86973 | 0.76 | 0.835932 |
Target: 5'- -gCGGCGAGCUGCgACGAGGucCGGCGGc -3' miRNA: 3'- aaGUUGUUCGACG-UGCUCUu-GUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 103868 | 0.76 | 0.852915 |
Target: 5'- -cCGACGAGa-GCgACGAGAGCGACGAg -3' miRNA: 3'- aaGUUGUUCgaCG-UGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 145856 | 0.76 | 0.835932 |
Target: 5'- cUCGACGAGCcGC-CGAGGGCcGCGAc -3' miRNA: 3'- aAGUUGUUCGaCGuGCUCUUGuUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 117342 | 0.75 | 0.891358 |
Target: 5'- -gCAGCGAGCUgaGCACGAucucguugGAGCGGCGGg -3' miRNA: 3'- aaGUUGUUCGA--CGUGCU--------CUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 95548 | 0.75 | 0.891358 |
Target: 5'- cUCAGCGaggcgcAGCUGgGCGAGGACgAGCGGc -3' miRNA: 3'- aAGUUGU------UCGACgUGCUCUUG-UUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 64700 | 0.74 | 0.923506 |
Target: 5'- --aGGCGAGCgcGgACGAGGACGACGAc -3' miRNA: 3'- aagUUGUUCGa-CgUGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 123619 | 0.74 | 0.917602 |
Target: 5'- --gGACGcGCUGCGCGAGGACA-UGAg -3' miRNA: 3'- aagUUGUuCGACGUGCUCUUGUuGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 37269 | 0.74 | 0.917602 |
Target: 5'- gUCGGCGGGC-GCGCGGGcGCGGCGu -3' miRNA: 3'- aAGUUGUUCGaCGUGCUCuUGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 98553 | 0.73 | 0.944465 |
Target: 5'- -aCGGCcAGCUGgGCGAaGACAACGAg -3' miRNA: 3'- aaGUUGuUCGACgUGCUcUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 90399 | 0.73 | 0.934516 |
Target: 5'- -gCGAuCGGGCUGCACGuGAGCAuCGGc -3' miRNA: 3'- aaGUU-GUUCGACGUGCuCUUGUuGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 61896 | 0.72 | 0.971276 |
Target: 5'- -gCGGCGAGC-GCgGCGAGcGCAGCGAc -3' miRNA: 3'- aaGUUGUUCGaCG-UGCUCuUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 122894 | 0.72 | 0.957439 |
Target: 5'- cUCAACGAGCgcacggGCGcCGAGuucGCGACGGu -3' miRNA: 3'- aAGUUGUUCGa-----CGU-GCUCu--UGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 141333 | 0.72 | 0.957439 |
Target: 5'- cUCGgugGCGAGCgaagACGAGAGCAGCGAc -3' miRNA: 3'- aAGU---UGUUCGacg-UGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 112084 | 0.72 | 0.967847 |
Target: 5'- gUCAGCAGGUcccguUGCGCGuccaggcgcggccGGGACGACGGc -3' miRNA: 3'- aAGUUGUUCG-----ACGUGC-------------UCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 10627 | 0.71 | 0.978566 |
Target: 5'- gUCAACAugccacgggcggggAGCgGCGCGAGccCGACGAg -3' miRNA: 3'- aAGUUGU--------------UCGaCGUGCUCuuGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 12706 | 0.71 | 0.979282 |
Target: 5'- gUCGGCcguGGGCUGCGCGuuccgcGGCGACGAg -3' miRNA: 3'- aAGUUG---UUCGACGUGCuc----UUGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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