miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 95670 1.08 0.021269
Target:  5'- cUUCAACAAGCUGCACGAGAACAACGAg -3'
miRNA:   3'- -AAGUUGUUCGACGUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 84365 0.79 0.708921
Target:  5'- gUCGACGccgacAGCgGCAcCGAGAGCAGCGAa -3'
miRNA:   3'- aAGUUGU-----UCGaCGU-GCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 144320 0.78 0.770488
Target:  5'- ----cCGAGCUGuUACGAGAGCGACGAc -3'
miRNA:   3'- aaguuGUUCGAC-GUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 9036 0.77 0.818124
Target:  5'- -gCAACcGGCUGgACGAGAuCAACGAg -3'
miRNA:   3'- aaGUUGuUCGACgUGCUCUuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 145856 0.76 0.835932
Target:  5'- cUCGACGAGCcGC-CGAGGGCcGCGAc -3'
miRNA:   3'- aAGUUGUUCGaCGuGCUCUUGuUGCU- -5'
10772 5' -48.3 NC_002794.1 + 86973 0.76 0.835932
Target:  5'- -gCGGCGAGCUGCgACGAGGucCGGCGGc -3'
miRNA:   3'- aaGUUGUUCGACG-UGCUCUu-GUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 103868 0.76 0.852915
Target:  5'- -cCGACGAGa-GCgACGAGAGCGACGAg -3'
miRNA:   3'- aaGUUGUUCgaCG-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 117342 0.75 0.891358
Target:  5'- -gCAGCGAGCUgaGCACGAucucguugGAGCGGCGGg -3'
miRNA:   3'- aaGUUGUUCGA--CGUGCU--------CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 95548 0.75 0.891358
Target:  5'- cUCAGCGaggcgcAGCUGgGCGAGGACgAGCGGc -3'
miRNA:   3'- aAGUUGU------UCGACgUGCUCUUG-UUGCU- -5'
10772 5' -48.3 NC_002794.1 + 37269 0.74 0.917602
Target:  5'- gUCGGCGGGC-GCGCGGGcGCGGCGu -3'
miRNA:   3'- aAGUUGUUCGaCGUGCUCuUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 123619 0.74 0.917602
Target:  5'- --gGACGcGCUGCGCGAGGACA-UGAg -3'
miRNA:   3'- aagUUGUuCGACGUGCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 64700 0.74 0.923506
Target:  5'- --aGGCGAGCgcGgACGAGGACGACGAc -3'
miRNA:   3'- aagUUGUUCGa-CgUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 90399 0.73 0.934516
Target:  5'- -gCGAuCGGGCUGCACGuGAGCAuCGGc -3'
miRNA:   3'- aaGUU-GUUCGACGUGCuCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 98553 0.73 0.944465
Target:  5'- -aCGGCcAGCUGgGCGAaGACAACGAg -3'
miRNA:   3'- aaGUUGuUCGACgUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 122894 0.72 0.957439
Target:  5'- cUCAACGAGCgcacggGCGcCGAGuucGCGACGGu -3'
miRNA:   3'- aAGUUGUUCGa-----CGU-GCUCu--UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 141333 0.72 0.957439
Target:  5'- cUCGgugGCGAGCgaagACGAGAGCAGCGAc -3'
miRNA:   3'- aAGU---UGUUCGacg-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 112084 0.72 0.967847
Target:  5'- gUCAGCAGGUcccguUGCGCGuccaggcgcggccGGGACGACGGc -3'
miRNA:   3'- aAGUUGUUCG-----ACGUGC-------------UCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 61896 0.72 0.971276
Target:  5'- -gCGGCGAGC-GCgGCGAGcGCAGCGAc -3'
miRNA:   3'- aaGUUGUUCGaCG-UGCUCuUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 146592 0.71 0.977832
Target:  5'- cUCGACgAAGCUGUcgagcgacgaaggcgGCGAGGACGuCGAa -3'
miRNA:   3'- aAGUUG-UUCGACG---------------UGCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 10627 0.71 0.978566
Target:  5'- gUCAACAugccacgggcggggAGCgGCGCGAGccCGACGAg -3'
miRNA:   3'- aAGUUGU--------------UCGaCGUGCUCuuGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.