Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10772 | 5' | -48.3 | NC_002794.1 | + | 12706 | 0.71 | 0.979282 |
Target: 5'- gUCGGCcguGGGCUGCGCGuuccgcGGCGACGAg -3' miRNA: 3'- aAGUUG---UUCGACGUGCuc----UUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 82840 | 0.7 | 0.9855 |
Target: 5'- -aCGGCGAGCgcgaGCGCGAGcGCGACc- -3' miRNA: 3'- aaGUUGUUCGa---CGUGCUCuUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 189047 | 0.7 | 0.987218 |
Target: 5'- -gCGGCGGGCUGCGCGucgcguACGGCGu -3' miRNA: 3'- aaGUUGUUCGACGUGCucu---UGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 63672 | 0.7 | 0.987218 |
Target: 5'- -aCGACGAGCgcgGcCGCGGcGACGACGAu -3' miRNA: 3'- aaGUUGUUCGa--C-GUGCUcUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 112366 | 0.7 | 0.988774 |
Target: 5'- -gCGGgGAGCUGCugGAacucggcacgcaGGGCGGCGAu -3' miRNA: 3'- aaGUUgUUCGACGugCU------------CUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 58826 | 0.7 | 0.988774 |
Target: 5'- cUCAACcgccuGCcGCGCGAGGACGcCGAc -3' miRNA: 3'- aAGUUGuu---CGaCGUGCUCUUGUuGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 55279 | 0.7 | 0.988774 |
Target: 5'- -gCGGCGguGGCgGCgACGAGGGCGGCGGc -3' miRNA: 3'- aaGUUGU--UCGaCG-UGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 122547 | 0.7 | 0.988774 |
Target: 5'- gUCGAgGuguGGCUGgACGAGAacgcGCAGCGGc -3' miRNA: 3'- aAGUUgU---UCGACgUGCUCU----UGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 85292 | 0.69 | 0.991443 |
Target: 5'- gUCAGC-GGCUGagACGAG-GCGACGAc -3' miRNA: 3'- aAGUUGuUCGACg-UGCUCuUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 15270 | 0.69 | 0.992574 |
Target: 5'- gUCGGCGAGCcGCGCGGcucccuccgcgcGAGCGACu- -3' miRNA: 3'- aAGUUGUUCGaCGUGCU------------CUUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 179606 | 0.69 | 0.99268 |
Target: 5'- gUCGAgGAGCgGCGCGAGcgacugccgggcgcuGCGACGGa -3' miRNA: 3'- aAGUUgUUCGaCGUGCUCu--------------UGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 46620 | 0.69 | 0.992992 |
Target: 5'- -gCGcCGGGCUGgACGAGAucacguuccgcccguGCAGCGAg -3' miRNA: 3'- aaGUuGUUCGACgUGCUCU---------------UGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 113157 | 0.69 | 0.993583 |
Target: 5'- gUCAGCGuguAGCgcGCGCGGGcGGCGGCGGu -3' miRNA: 3'- aAGUUGU---UCGa-CGUGCUC-UUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 62483 | 0.69 | 0.994479 |
Target: 5'- cUCGACGAGC-GCGaGuGGACGGCGGg -3' miRNA: 3'- aAGUUGUUCGaCGUgCuCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 103895 | 0.69 | 0.994479 |
Target: 5'- -gCGACGAGCaGCgggGCGAGAACGccgcgcaacgcgGCGAg -3' miRNA: 3'- aaGUUGUUCGaCG---UGCUCUUGU------------UGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 79982 | 0.69 | 0.994479 |
Target: 5'- cUCGGCGacgaggaggcggAGgaGgACGAGGACGGCGAc -3' miRNA: 3'- aAGUUGU------------UCgaCgUGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 26159 | 0.69 | 0.995196 |
Target: 5'- -cCAACAcacucccacacccAGCUccGCGCGGGAGCggUGAc -3' miRNA: 3'- aaGUUGU-------------UCGA--CGUGCUCUUGuuGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 125459 | 0.69 | 0.995271 |
Target: 5'- -gCGGCGAGCacgGcCGCGAGAAUAaguACGAg -3' miRNA: 3'- aaGUUGUUCGa--C-GUGCUCUUGU---UGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 105862 | 0.68 | 0.995968 |
Target: 5'- -aCGACGugAGCgGCGcCGAGGACGugGGg -3' miRNA: 3'- aaGUUGU--UCGaCGU-GCUCUUGUugCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 58787 | 0.68 | 0.995968 |
Target: 5'- gUCAGCGcGCUGCACGAc--CGGCGc -3' miRNA: 3'- aAGUUGUuCGACGUGCUcuuGUUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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