Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10772 | 5' | -48.3 | NC_002794.1 | + | 11524 | 0.68 | 0.996579 |
Target: 5'- -aCGAuCGAGCUGCGggcgacCGAGGACcGCGGc -3' miRNA: 3'- aaGUU-GUUCGACGU------GCUCUUGuUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 92295 | 0.68 | 0.996579 |
Target: 5'- gUCGGCGacgaggcggGGCUGgGCGcGGGCGGCGGg -3' miRNA: 3'- aAGUUGU---------UCGACgUGCuCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 94049 | 0.68 | 0.996579 |
Target: 5'- -gCGGC-GGCgGUGCGGGGGCGGCGGg -3' miRNA: 3'- aaGUUGuUCGaCGUGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 172200 | 0.68 | 0.996579 |
Target: 5'- -gCAGCGcgauGC-GUAUGAGAGCAACGGu -3' miRNA: 3'- aaGUUGUu---CGaCGUGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 148297 | 0.68 | 0.996579 |
Target: 5'- cUCGACGuGCUGUACGAcccCGACGGc -3' miRNA: 3'- aAGUUGUuCGACGUGCUcuuGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 101421 | 0.68 | 0.997111 |
Target: 5'- cUCGACGuGGCUGCGCGAcgauccggGGACGcCGGc -3' miRNA: 3'- aAGUUGU-UCGACGUGCU--------CUUGUuGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 33892 | 0.68 | 0.997111 |
Target: 5'- cUCAugGAGCgGCACGAcaaGACGAcCGAc -3' miRNA: 3'- aAGUugUUCGaCGUGCUc--UUGUU-GCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 123410 | 0.68 | 0.997111 |
Target: 5'- gUCGGCGuGgaGUACGAcAGCGACGAg -3' miRNA: 3'- aAGUUGUuCgaCGUGCUcUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 68553 | 0.68 | 0.997304 |
Target: 5'- -cCGACAAGCUGCggguGucgccgacggcguucCGAGAACAACa- -3' miRNA: 3'- aaGUUGUUCGACG----U---------------GCUCUUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 103628 | 0.68 | 0.997573 |
Target: 5'- aUCuGCucguuGCUGUACGGGGACAGguCGAg -3' miRNA: 3'- aAGuUGuu---CGACGUGCUCUUGUU--GCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 33180 | 0.68 | 0.997858 |
Target: 5'- cUUCuACGGGCUGUGCGuGAaauuguuuaacaguGCGACGGu -3' miRNA: 3'- -AAGuUGUUCGACGUGCuCU--------------UGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 84000 | 0.68 | 0.997971 |
Target: 5'- -aCGACGGGCacgacggGCACGAcGGGCAcgaGCGAc -3' miRNA: 3'- aaGUUGUUCGa------CGUGCU-CUUGU---UGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 40110 | 0.68 | 0.997971 |
Target: 5'- -aCGACGggGGC-GCGCGAGAGCGGaGAg -3' miRNA: 3'- aaGUUGU--UCGaCGUGCUCUUGUUgCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 17998 | 0.68 | 0.997971 |
Target: 5'- -cCGGCGAGUacUACGAGGACGGCGu -3' miRNA: 3'- aaGUUGUUCGacGUGCUCUUGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 19449 | 0.67 | 0.998313 |
Target: 5'- ----cCGAGCggGCACGAGcGGCGGCGGc -3' miRNA: 3'- aaguuGUUCGa-CGUGCUC-UUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 57182 | 0.67 | 0.998313 |
Target: 5'- cUUCGugcuGCAGacGCUGCGCGAGcACAGCc- -3' miRNA: 3'- -AAGU----UGUU--CGACGUGCUCuUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 127322 | 0.67 | 0.998523 |
Target: 5'- cUCGACGAcggagacgagcgccGCUGC-CGAGAcgcucGCGGCGGc -3' miRNA: 3'- aAGUUGUU--------------CGACGuGCUCU-----UGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 51864 | 0.67 | 0.998605 |
Target: 5'- aUUCGACAucuuccGCUacaGCACGAuGAACAACa- -3' miRNA: 3'- -AAGUUGUu-----CGA---CGUGCU-CUUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 98736 | 0.67 | 0.998605 |
Target: 5'- ----uCGAGCcGCugGAGAACAcCGAc -3' miRNA: 3'- aaguuGUUCGaCGugCUCUUGUuGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 149835 | 0.67 | 0.998605 |
Target: 5'- --gGACGGGCggGgACGAGGACGgggACGAg -3' miRNA: 3'- aagUUGUUCGa-CgUGCUCUUGU---UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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