miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 181580 0.66 0.999385
Target:  5'- aUCGACAGGCUGCGgGcc-GCGACc- -3'
miRNA:   3'- aAGUUGUUCGACGUgCucuUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 118248 0.67 0.999238
Target:  5'- gUCGGCGGGCUGgAgGucggccGGGGCGGCGGc -3'
miRNA:   3'- aAGUUGUUCGACgUgC------UCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 40642 0.67 0.999238
Target:  5'- ---cGCGAGCUGaGCGGGcAGCGACGu -3'
miRNA:   3'- aaguUGUUCGACgUGCUC-UUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 106262 0.67 0.999206
Target:  5'- -cCGGCGAGCgccGCGCGucgcgccgccucGGACGGCGAg -3'
miRNA:   3'- aaGUUGUUCGa--CGUGCu-----------CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 190983 0.67 0.999063
Target:  5'- --gAGCAGGCaGCGCGGcGACGGCGu -3'
miRNA:   3'- aagUUGUUCGaCGUGCUcUUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 106428 0.67 0.999063
Target:  5'- cUCAugGcGCUGUugGAGAA-GGCGGu -3'
miRNA:   3'- aAGUugUuCGACGugCUCUUgUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 91195 0.67 0.999063
Target:  5'- -cCGGCGAcGCUGUuCGcGGACGGCGAc -3'
miRNA:   3'- aaGUUGUU-CGACGuGCuCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 142174 0.67 0.999063
Target:  5'- -gCAGCGucGGCaGCGCGAGgAGCGGCa- -3'
miRNA:   3'- aaGUUGU--UCGaCGUGCUC-UUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 57822 0.67 0.999063
Target:  5'- cUCGACGgccaGGCcuacaGCACGcuGGACAACGAg -3'
miRNA:   3'- aAGUUGU----UCGa----CGUGCu-CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 125692 0.67 0.99883
Target:  5'- -gCGACGuguuGCUGCGCGugacgguGGAGCGgaGCGAa -3'
miRNA:   3'- aaGUUGUu---CGACGUGC-------UCUUGU--UGCU- -5'
10772 5' -48.3 NC_002794.1 + 124895 0.67 0.998605
Target:  5'- -aCGGCcagGAGCUGgucCGCGAGAcCGGCGAg -3'
miRNA:   3'- aaGUUG---UUCGAC---GUGCUCUuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 51864 0.67 0.998605
Target:  5'- aUUCGACAucuuccGCUacaGCACGAuGAACAACa- -3'
miRNA:   3'- -AAGUUGUu-----CGA---CGUGCU-CUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 98736 0.67 0.998605
Target:  5'- ----uCGAGCcGCugGAGAACAcCGAc -3'
miRNA:   3'- aaguuGUUCGaCGugCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 149835 0.67 0.998605
Target:  5'- --gGACGGGCggGgACGAGGACGgggACGAg -3'
miRNA:   3'- aagUUGUUCGa-CgUGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 127322 0.67 0.998523
Target:  5'- cUCGACGAcggagacgagcgccGCUGC-CGAGAcgcucGCGGCGGc -3'
miRNA:   3'- aAGUUGUU--------------CGACGuGCUCU-----UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 57182 0.67 0.998313
Target:  5'- cUUCGugcuGCAGacGCUGCGCGAGcACAGCc- -3'
miRNA:   3'- -AAGU----UGUU--CGACGUGCUCuUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 19449 0.67 0.998313
Target:  5'- ----cCGAGCggGCACGAGcGGCGGCGGc -3'
miRNA:   3'- aaguuGUUCGa-CGUGCUC-UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 84000 0.68 0.997971
Target:  5'- -aCGACGGGCacgacggGCACGAcGGGCAcgaGCGAc -3'
miRNA:   3'- aaGUUGUUCGa------CGUGCU-CUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 40110 0.68 0.997971
Target:  5'- -aCGACGggGGC-GCGCGAGAGCGGaGAg -3'
miRNA:   3'- aaGUUGU--UCGaCGUGCUCUUGUUgCU- -5'
10772 5' -48.3 NC_002794.1 + 17998 0.68 0.997971
Target:  5'- -cCGGCGAGUacUACGAGGACGGCGu -3'
miRNA:   3'- aaGUUGUUCGacGUGCUCUUGUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.