miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 33180 0.68 0.997858
Target:  5'- cUUCuACGGGCUGUGCGuGAaauuguuuaacaguGCGACGGu -3'
miRNA:   3'- -AAGuUGUUCGACGUGCuCU--------------UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 103628 0.68 0.997573
Target:  5'- aUCuGCucguuGCUGUACGGGGACAGguCGAg -3'
miRNA:   3'- aAGuUGuu---CGACGUGCUCUUGUU--GCU- -5'
10772 5' -48.3 NC_002794.1 + 68553 0.68 0.997304
Target:  5'- -cCGACAAGCUGCggguGucgccgacggcguucCGAGAACAACa- -3'
miRNA:   3'- aaGUUGUUCGACG----U---------------GCUCUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 33892 0.68 0.997111
Target:  5'- cUCAugGAGCgGCACGAcaaGACGAcCGAc -3'
miRNA:   3'- aAGUugUUCGaCGUGCUc--UUGUU-GCU- -5'
10772 5' -48.3 NC_002794.1 + 101421 0.68 0.997111
Target:  5'- cUCGACGuGGCUGCGCGAcgauccggGGACGcCGGc -3'
miRNA:   3'- aAGUUGU-UCGACGUGCU--------CUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 123410 0.68 0.997111
Target:  5'- gUCGGCGuGgaGUACGAcAGCGACGAg -3'
miRNA:   3'- aAGUUGUuCgaCGUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 148297 0.68 0.996579
Target:  5'- cUCGACGuGCUGUACGAcccCGACGGc -3'
miRNA:   3'- aAGUUGUuCGACGUGCUcuuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 172200 0.68 0.996579
Target:  5'- -gCAGCGcgauGC-GUAUGAGAGCAACGGu -3'
miRNA:   3'- aaGUUGUu---CGaCGUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 94049 0.68 0.996579
Target:  5'- -gCGGC-GGCgGUGCGGGGGCGGCGGg -3'
miRNA:   3'- aaGUUGuUCGaCGUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 92295 0.68 0.996579
Target:  5'- gUCGGCGacgaggcggGGCUGgGCGcGGGCGGCGGg -3'
miRNA:   3'- aAGUUGU---------UCGACgUGCuCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 11524 0.68 0.996579
Target:  5'- -aCGAuCGAGCUGCGggcgacCGAGGACcGCGGc -3'
miRNA:   3'- aaGUU-GUUCGACGU------GCUCUUGuUGCU- -5'
10772 5' -48.3 NC_002794.1 + 105862 0.68 0.995968
Target:  5'- -aCGACGugAGCgGCGcCGAGGACGugGGg -3'
miRNA:   3'- aaGUUGU--UCGaCGU-GCUCUUGUugCU- -5'
10772 5' -48.3 NC_002794.1 + 58787 0.68 0.995968
Target:  5'- gUCAGCGcGCUGCACGAc--CGGCGc -3'
miRNA:   3'- aAGUUGUuCGACGUGCUcuuGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 125459 0.69 0.995271
Target:  5'- -gCGGCGAGCacgGcCGCGAGAAUAaguACGAg -3'
miRNA:   3'- aaGUUGUUCGa--C-GUGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 26159 0.69 0.995196
Target:  5'- -cCAACAcacucccacacccAGCUccGCGCGGGAGCggUGAc -3'
miRNA:   3'- aaGUUGU-------------UCGA--CGUGCUCUUGuuGCU- -5'
10772 5' -48.3 NC_002794.1 + 62483 0.69 0.994479
Target:  5'- cUCGACGAGC-GCGaGuGGACGGCGGg -3'
miRNA:   3'- aAGUUGUUCGaCGUgCuCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 79982 0.69 0.994479
Target:  5'- cUCGGCGacgaggaggcggAGgaGgACGAGGACGGCGAc -3'
miRNA:   3'- aAGUUGU------------UCgaCgUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 103895 0.69 0.994479
Target:  5'- -gCGACGAGCaGCgggGCGAGAACGccgcgcaacgcgGCGAg -3'
miRNA:   3'- aaGUUGUUCGaCG---UGCUCUUGU------------UGCU- -5'
10772 5' -48.3 NC_002794.1 + 113157 0.69 0.993583
Target:  5'- gUCAGCGuguAGCgcGCGCGGGcGGCGGCGGu -3'
miRNA:   3'- aAGUUGU---UCGa-CGUGCUC-UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 46620 0.69 0.992992
Target:  5'- -gCGcCGGGCUGgACGAGAucacguuccgcccguGCAGCGAg -3'
miRNA:   3'- aaGUuGUUCGACgUGCUCU---------------UGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.