miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 179606 0.69 0.99268
Target:  5'- gUCGAgGAGCgGCGCGAGcgacugccgggcgcuGCGACGGa -3'
miRNA:   3'- aAGUUgUUCGaCGUGCUCu--------------UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 15270 0.69 0.992574
Target:  5'- gUCGGCGAGCcGCGCGGcucccuccgcgcGAGCGACu- -3'
miRNA:   3'- aAGUUGUUCGaCGUGCU------------CUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 85292 0.69 0.991443
Target:  5'- gUCAGC-GGCUGagACGAG-GCGACGAc -3'
miRNA:   3'- aAGUUGuUCGACg-UGCUCuUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 58826 0.7 0.988774
Target:  5'- cUCAACcgccuGCcGCGCGAGGACGcCGAc -3'
miRNA:   3'- aAGUUGuu---CGaCGUGCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 122547 0.7 0.988774
Target:  5'- gUCGAgGuguGGCUGgACGAGAacgcGCAGCGGc -3'
miRNA:   3'- aAGUUgU---UCGACgUGCUCU----UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 112366 0.7 0.988774
Target:  5'- -gCGGgGAGCUGCugGAacucggcacgcaGGGCGGCGAu -3'
miRNA:   3'- aaGUUgUUCGACGugCU------------CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 55279 0.7 0.988774
Target:  5'- -gCGGCGguGGCgGCgACGAGGGCGGCGGc -3'
miRNA:   3'- aaGUUGU--UCGaCG-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 189047 0.7 0.987218
Target:  5'- -gCGGCGGGCUGCGCGucgcguACGGCGu -3'
miRNA:   3'- aaGUUGUUCGACGUGCucu---UGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 63672 0.7 0.987218
Target:  5'- -aCGACGAGCgcgGcCGCGGcGACGACGAu -3'
miRNA:   3'- aaGUUGUUCGa--C-GUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 82840 0.7 0.9855
Target:  5'- -aCGGCGAGCgcgaGCGCGAGcGCGACc- -3'
miRNA:   3'- aaGUUGUUCGa---CGUGCUCuUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 12706 0.71 0.979282
Target:  5'- gUCGGCcguGGGCUGCGCGuuccgcGGCGACGAg -3'
miRNA:   3'- aAGUUG---UUCGACGUGCuc----UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 10627 0.71 0.978566
Target:  5'- gUCAACAugccacgggcggggAGCgGCGCGAGccCGACGAg -3'
miRNA:   3'- aAGUUGU--------------UCGaCGUGCUCuuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 146592 0.71 0.977832
Target:  5'- cUCGACgAAGCUGUcgagcgacgaaggcgGCGAGGACGuCGAa -3'
miRNA:   3'- aAGUUG-UUCGACG---------------UGCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 61896 0.72 0.971276
Target:  5'- -gCGGCGAGC-GCgGCGAGcGCAGCGAc -3'
miRNA:   3'- aaGUUGUUCGaCG-UGCUCuUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 112084 0.72 0.967847
Target:  5'- gUCAGCAGGUcccguUGCGCGuccaggcgcggccGGGACGACGGc -3'
miRNA:   3'- aAGUUGUUCG-----ACGUGC-------------UCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 122894 0.72 0.957439
Target:  5'- cUCAACGAGCgcacggGCGcCGAGuucGCGACGGu -3'
miRNA:   3'- aAGUUGUUCGa-----CGU-GCUCu--UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 141333 0.72 0.957439
Target:  5'- cUCGgugGCGAGCgaagACGAGAGCAGCGAc -3'
miRNA:   3'- aAGU---UGUUCGacg-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 98553 0.73 0.944465
Target:  5'- -aCGGCcAGCUGgGCGAaGACAACGAg -3'
miRNA:   3'- aaGUUGuUCGACgUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 90399 0.73 0.934516
Target:  5'- -gCGAuCGGGCUGCACGuGAGCAuCGGc -3'
miRNA:   3'- aaGUU-GUUCGACGUGCuCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 64700 0.74 0.923506
Target:  5'- --aGGCGAGCgcGgACGAGGACGACGAc -3'
miRNA:   3'- aagUUGUUCGa-CgUGCUCUUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.