miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 9036 0.77 0.818124
Target:  5'- -gCAACcGGCUGgACGAGAuCAACGAg -3'
miRNA:   3'- aaGUUGuUCGACgUGCUCUuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 10627 0.71 0.978566
Target:  5'- gUCAACAugccacgggcggggAGCgGCGCGAGccCGACGAg -3'
miRNA:   3'- aAGUUGU--------------UCGaCGUGCUCuuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 11524 0.68 0.996579
Target:  5'- -aCGAuCGAGCUGCGggcgacCGAGGACcGCGGc -3'
miRNA:   3'- aaGUU-GUUCGACGU------GCUCUUGuUGCU- -5'
10772 5' -48.3 NC_002794.1 + 12706 0.71 0.979282
Target:  5'- gUCGGCcguGGGCUGCGCGuuccgcGGCGACGAg -3'
miRNA:   3'- aAGUUG---UUCGACGUGCuc----UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 15270 0.69 0.992574
Target:  5'- gUCGGCGAGCcGCGCGGcucccuccgcgcGAGCGACu- -3'
miRNA:   3'- aAGUUGUUCGaCGUGCU------------CUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 17998 0.68 0.997971
Target:  5'- -cCGGCGAGUacUACGAGGACGGCGu -3'
miRNA:   3'- aaGUUGUUCGacGUGCUCUUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 19449 0.67 0.998313
Target:  5'- ----cCGAGCggGCACGAGcGGCGGCGGc -3'
miRNA:   3'- aaguuGUUCGa-CGUGCUC-UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 26159 0.69 0.995196
Target:  5'- -cCAACAcacucccacacccAGCUccGCGCGGGAGCggUGAc -3'
miRNA:   3'- aaGUUGU-------------UCGA--CGUGCUCUUGuuGCU- -5'
10772 5' -48.3 NC_002794.1 + 33180 0.68 0.997858
Target:  5'- cUUCuACGGGCUGUGCGuGAaauuguuuaacaguGCGACGGu -3'
miRNA:   3'- -AAGuUGUUCGACGUGCuCU--------------UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 33892 0.68 0.997111
Target:  5'- cUCAugGAGCgGCACGAcaaGACGAcCGAc -3'
miRNA:   3'- aAGUugUUCGaCGUGCUc--UUGUU-GCU- -5'
10772 5' -48.3 NC_002794.1 + 37269 0.74 0.917602
Target:  5'- gUCGGCGGGC-GCGCGGGcGCGGCGu -3'
miRNA:   3'- aAGUUGUUCGaCGUGCUCuUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 40110 0.68 0.997971
Target:  5'- -aCGACGggGGC-GCGCGAGAGCGGaGAg -3'
miRNA:   3'- aaGUUGU--UCGaCGUGCUCUUGUUgCU- -5'
10772 5' -48.3 NC_002794.1 + 40642 0.67 0.999238
Target:  5'- ---cGCGAGCUGaGCGGGcAGCGACGu -3'
miRNA:   3'- aaguUGUUCGACgUGCUC-UUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 46620 0.69 0.992992
Target:  5'- -gCGcCGGGCUGgACGAGAucacguuccgcccguGCAGCGAg -3'
miRNA:   3'- aaGUuGUUCGACgUGCUCU---------------UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 47445 0.66 0.999607
Target:  5'- uUUCAGgAcGggGCACGAG-ACGACGAu -3'
miRNA:   3'- -AAGUUgUuCgaCGUGCUCuUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 51036 0.66 0.999607
Target:  5'- -gCAACAGGCUauucaucccGUcCGAGAcgGCGGCGAc -3'
miRNA:   3'- aaGUUGUUCGA---------CGuGCUCU--UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 51864 0.67 0.998605
Target:  5'- aUUCGACAucuuccGCUacaGCACGAuGAACAACa- -3'
miRNA:   3'- -AAGUUGUu-----CGA---CGUGCU-CUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 55279 0.7 0.988774
Target:  5'- -gCGGCGguGGCgGCgACGAGGGCGGCGGc -3'
miRNA:   3'- aaGUUGU--UCGaCG-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 57182 0.67 0.998313
Target:  5'- cUUCGugcuGCAGacGCUGCGCGAGcACAGCc- -3'
miRNA:   3'- -AAGU----UGUU--CGACGUGCUCuUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 57822 0.67 0.999063
Target:  5'- cUCGACGgccaGGCcuacaGCACGcuGGACAACGAg -3'
miRNA:   3'- aAGUUGU----UCGa----CGUGCu-CUUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.