miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 58787 0.68 0.995968
Target:  5'- gUCAGCGcGCUGCACGAc--CGGCGc -3'
miRNA:   3'- aAGUUGUuCGACGUGCUcuuGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 58826 0.7 0.988774
Target:  5'- cUCAACcgccuGCcGCGCGAGGACGcCGAc -3'
miRNA:   3'- aAGUUGuu---CGaCGUGCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 61896 0.72 0.971276
Target:  5'- -gCGGCGAGC-GCgGCGAGcGCAGCGAc -3'
miRNA:   3'- aaGUUGUUCGaCG-UGCUCuUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 62483 0.69 0.994479
Target:  5'- cUCGACGAGC-GCGaGuGGACGGCGGg -3'
miRNA:   3'- aAGUUGUUCGaCGUgCuCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 63672 0.7 0.987218
Target:  5'- -aCGACGAGCgcgGcCGCGGcGACGACGAu -3'
miRNA:   3'- aaGUUGUUCGa--C-GUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 64700 0.74 0.923506
Target:  5'- --aGGCGAGCgcGgACGAGGACGACGAc -3'
miRNA:   3'- aagUUGUUCGa-CgUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 64863 0.66 0.999755
Target:  5'- cUCGACGuGCcGCucgACGAGGACGaagACGAg -3'
miRNA:   3'- aAGUUGUuCGaCG---UGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 68553 0.68 0.997304
Target:  5'- -cCGACAAGCUGCggguGucgccgacggcguucCGAGAACAACa- -3'
miRNA:   3'- aaGUUGUUCGACG----U---------------GCUCUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 79440 0.66 0.999689
Target:  5'- -gCGGCGgcGGCgaccgGCGCGGaGACGACGAc -3'
miRNA:   3'- aaGUUGU--UCGa----CGUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 79982 0.69 0.994479
Target:  5'- cUCGGCGacgaggaggcggAGgaGgACGAGGACGGCGAc -3'
miRNA:   3'- aAGUUGU------------UCgaCgUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 80582 0.66 0.999689
Target:  5'- -aCGcACGGGCUGacggACGAGAACcuGACGGa -3'
miRNA:   3'- aaGU-UGUUCGACg---UGCUCUUG--UUGCU- -5'
10772 5' -48.3 NC_002794.1 + 82840 0.7 0.9855
Target:  5'- -aCGGCGAGCgcgaGCGCGAGcGCGACc- -3'
miRNA:   3'- aaGUUGUUCGa---CGUGCUCuUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 84000 0.68 0.997971
Target:  5'- -aCGACGGGCacgacggGCACGAcGGGCAcgaGCGAc -3'
miRNA:   3'- aaGUUGUUCGa------CGUGCU-CUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 84278 0.66 0.999385
Target:  5'- aUUCcGC-AGCUGCcgACgGGGAGCGGCGGc -3'
miRNA:   3'- -AAGuUGuUCGACG--UG-CUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 84365 0.79 0.708921
Target:  5'- gUCGACGccgacAGCgGCAcCGAGAGCAGCGAa -3'
miRNA:   3'- aAGUUGU-----UCGaCGU-GCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 85292 0.69 0.991443
Target:  5'- gUCAGC-GGCUGagACGAG-GCGACGAc -3'
miRNA:   3'- aAGUUGuUCGACg-UGCUCuUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 86933 0.66 0.999507
Target:  5'- --gGGCAGGCgGgGCGGGAucCGGCGAg -3'
miRNA:   3'- aagUUGUUCGaCgUGCUCUu-GUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 86973 0.76 0.835932
Target:  5'- -gCGGCGAGCUGCgACGAGGucCGGCGGc -3'
miRNA:   3'- aaGUUGUUCGACG-UGCUCUu-GUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 90399 0.73 0.934516
Target:  5'- -gCGAuCGGGCUGCACGuGAGCAuCGGc -3'
miRNA:   3'- aaGUU-GUUCGACGUGCuCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 91195 0.67 0.999063
Target:  5'- -cCGGCGAcGCUGUuCGcGGACGGCGAc -3'
miRNA:   3'- aaGUUGUU-CGACGuGCuCUUGUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.