miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 92295 0.68 0.996579
Target:  5'- gUCGGCGacgaggcggGGCUGgGCGcGGGCGGCGGg -3'
miRNA:   3'- aAGUUGU---------UCGACgUGCuCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 94049 0.68 0.996579
Target:  5'- -gCGGC-GGCgGUGCGGGGGCGGCGGg -3'
miRNA:   3'- aaGUUGuUCGaCGUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 94772 0.66 0.999689
Target:  5'- gUCGACGAggcGCUGgGCGAguucGAGCGGCa- -3'
miRNA:   3'- aAGUUGUU---CGACgUGCU----CUUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 95548 0.75 0.891358
Target:  5'- cUCAGCGaggcgcAGCUGgGCGAGGACgAGCGGc -3'
miRNA:   3'- aAGUUGU------UCGACgUGCUCUUG-UUGCU- -5'
10772 5' -48.3 NC_002794.1 + 95670 1.08 0.021269
Target:  5'- cUUCAACAAGCUGCACGAGAACAACGAg -3'
miRNA:   3'- -AAGUUGUUCGACGUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 96444 0.66 0.999385
Target:  5'- cUCAACGAGCUGCAgaaaggcuucUGGGcuCAcguGCGGg -3'
miRNA:   3'- aAGUUGUUCGACGU----------GCUCuuGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 98553 0.73 0.944465
Target:  5'- -aCGGCcAGCUGgGCGAaGACAACGAg -3'
miRNA:   3'- aaGUUGuUCGACgUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 98736 0.67 0.998605
Target:  5'- ----uCGAGCcGCugGAGAACAcCGAc -3'
miRNA:   3'- aaguuGUUCGaCGugCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 101421 0.68 0.997111
Target:  5'- cUCGACGuGGCUGCGCGAcgauccggGGACGcCGGc -3'
miRNA:   3'- aAGUUGU-UCGACGUGCU--------CUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 101637 0.66 0.999689
Target:  5'- gUCcGCGAGCgUGgGCGGGcgGGCGGCGGu -3'
miRNA:   3'- aAGuUGUUCG-ACgUGCUC--UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 103581 0.66 0.999755
Target:  5'- -cCGACGAGCaGCGguCGGGcaGGCAGCGGc -3'
miRNA:   3'- aaGUUGUUCGaCGU--GCUC--UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 103628 0.68 0.997573
Target:  5'- aUCuGCucguuGCUGUACGGGGACAGguCGAg -3'
miRNA:   3'- aAGuUGuu---CGACGUGCUCUUGUU--GCU- -5'
10772 5' -48.3 NC_002794.1 + 103868 0.76 0.852915
Target:  5'- -cCGACGAGa-GCgACGAGAGCGACGAg -3'
miRNA:   3'- aaGUUGUUCgaCG-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 103895 0.69 0.994479
Target:  5'- -gCGACGAGCaGCgggGCGAGAACGccgcgcaacgcgGCGAg -3'
miRNA:   3'- aaGUUGUUCGaCG---UGCUCUUGU------------UGCU- -5'
10772 5' -48.3 NC_002794.1 + 105862 0.68 0.995968
Target:  5'- -aCGACGugAGCgGCGcCGAGGACGugGGg -3'
miRNA:   3'- aaGUUGU--UCGaCGU-GCUCUUGUugCU- -5'
10772 5' -48.3 NC_002794.1 + 106262 0.67 0.999206
Target:  5'- -cCGGCGAGCgccGCGCGucgcgccgccucGGACGGCGAg -3'
miRNA:   3'- aaGUUGUUCGa--CGUGCu-----------CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 106312 0.66 0.999507
Target:  5'- -aCGACGAGCgcgacgcGCGCGAcGGGuCGACGGu -3'
miRNA:   3'- aaGUUGUUCGa------CGUGCU-CUU-GUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 106428 0.67 0.999063
Target:  5'- cUCAugGcGCUGUugGAGAA-GGCGGu -3'
miRNA:   3'- aAGUugUuCGACGugCUCUUgUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 107109 0.66 0.999549
Target:  5'- gUCGcuGCGAGCcGCgcuucuuugaccgcgACGGGAACGACGu -3'
miRNA:   3'- aAGU--UGUUCGaCG---------------UGCUCUUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 112084 0.72 0.967847
Target:  5'- gUCAGCAGGUcccguUGCGCGuccaggcgcggccGGGACGACGGc -3'
miRNA:   3'- aAGUUGUUCG-----ACGUGC-------------UCUUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.