miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 190983 0.67 0.999063
Target:  5'- --gAGCAGGCaGCGCGGcGACGGCGu -3'
miRNA:   3'- aagUUGUUCGaCGUGCUcUUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 189047 0.7 0.987218
Target:  5'- -gCGGCGGGCUGCGCGucgcguACGGCGu -3'
miRNA:   3'- aaGUUGUUCGACGUGCucu---UGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 181580 0.66 0.999385
Target:  5'- aUCGACAGGCUGCGgGcc-GCGACc- -3'
miRNA:   3'- aAGUUGUUCGACGUgCucuUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 179606 0.69 0.99268
Target:  5'- gUCGAgGAGCgGCGCGAGcgacugccgggcgcuGCGACGGa -3'
miRNA:   3'- aAGUUgUUCGaCGUGCUCu--------------UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 176936 0.66 0.999689
Target:  5'- aUCGugGccGCUGagugaaACGGGGGCAGCGGg -3'
miRNA:   3'- aAGUugUu-CGACg-----UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 172200 0.68 0.996579
Target:  5'- -gCAGCGcgauGC-GUAUGAGAGCAACGGu -3'
miRNA:   3'- aaGUUGUu---CGaCGUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 153400 0.66 0.999607
Target:  5'- aUC-GCGAGCUGuCGCGAGcGCcGCGc -3'
miRNA:   3'- aAGuUGUUCGAC-GUGCUCuUGuUGCu -5'
10772 5' -48.3 NC_002794.1 + 149835 0.67 0.998605
Target:  5'- --gGACGGGCggGgACGAGGACGgggACGAg -3'
miRNA:   3'- aagUUGUUCGa-CgUGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 148297 0.68 0.996579
Target:  5'- cUCGACGuGCUGUACGAcccCGACGGc -3'
miRNA:   3'- aAGUUGUuCGACGUGCUcuuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 146592 0.71 0.977832
Target:  5'- cUCGACgAAGCUGUcgagcgacgaaggcgGCGAGGACGuCGAa -3'
miRNA:   3'- aAGUUG-UUCGACG---------------UGCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 145856 0.76 0.835932
Target:  5'- cUCGACGAGCcGC-CGAGGGCcGCGAc -3'
miRNA:   3'- aAGUUGUUCGaCGuGCUCUUGuUGCU- -5'
10772 5' -48.3 NC_002794.1 + 144320 0.78 0.770488
Target:  5'- ----cCGAGCUGuUACGAGAGCGACGAc -3'
miRNA:   3'- aaguuGUUCGAC-GUGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 142607 0.66 0.999385
Target:  5'- --uGACGAGCUggcGCACGGGcgaguACAGCGc -3'
miRNA:   3'- aagUUGUUCGA---CGUGCUCu----UGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 142216 0.66 0.999607
Target:  5'- -gCGGCAgcGGCgGUGCGGGgAGCGGCGGa -3'
miRNA:   3'- aaGUUGU--UCGaCGUGCUC-UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 142174 0.67 0.999063
Target:  5'- -gCAGCGucGGCaGCGCGAGgAGCGGCa- -3'
miRNA:   3'- aaGUUGU--UCGaCGUGCUC-UUGUUGcu -5'
10772 5' -48.3 NC_002794.1 + 141333 0.72 0.957439
Target:  5'- cUCGgugGCGAGCgaagACGAGAGCAGCGAc -3'
miRNA:   3'- aAGU---UGUUCGacg-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 139456 0.66 0.999607
Target:  5'- aUCGGCAGGUcgucgUGCGCcAGGACggUGGu -3'
miRNA:   3'- aAGUUGUUCG-----ACGUGcUCUUGuuGCU- -5'
10772 5' -48.3 NC_002794.1 + 136134 0.66 0.999607
Target:  5'- gUCGAaGAGgaGgGCGAGGACGgggGCGAa -3'
miRNA:   3'- aAGUUgUUCgaCgUGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 127322 0.67 0.998523
Target:  5'- cUCGACGAcggagacgagcgccGCUGC-CGAGAcgcucGCGGCGGc -3'
miRNA:   3'- aAGUUGUU--------------CGACGuGCUCU-----UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 125692 0.67 0.99883
Target:  5'- -gCGACGuguuGCUGCGCGugacgguGGAGCGgaGCGAa -3'
miRNA:   3'- aaGUUGUu---CGACGUGC-------UCUUGU--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.