miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10772 5' -48.3 NC_002794.1 + 125459 0.69 0.995271
Target:  5'- -gCGGCGAGCacgGcCGCGAGAAUAaguACGAg -3'
miRNA:   3'- aaGUUGUUCGa--C-GUGCUCUUGU---UGCU- -5'
10772 5' -48.3 NC_002794.1 + 124895 0.67 0.998605
Target:  5'- -aCGGCcagGAGCUGgucCGCGAGAcCGGCGAg -3'
miRNA:   3'- aaGUUG---UUCGAC---GUGCUCUuGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 123619 0.74 0.917602
Target:  5'- --gGACGcGCUGCGCGAGGACA-UGAg -3'
miRNA:   3'- aagUUGUuCGACGUGCUCUUGUuGCU- -5'
10772 5' -48.3 NC_002794.1 + 123410 0.68 0.997111
Target:  5'- gUCGGCGuGgaGUACGAcAGCGACGAg -3'
miRNA:   3'- aAGUUGUuCgaCGUGCUcUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 122894 0.72 0.957439
Target:  5'- cUCAACGAGCgcacggGCGcCGAGuucGCGACGGu -3'
miRNA:   3'- aAGUUGUUCGa-----CGU-GCUCu--UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 122547 0.7 0.988774
Target:  5'- gUCGAgGuguGGCUGgACGAGAacgcGCAGCGGc -3'
miRNA:   3'- aAGUUgU---UCGACgUGCUCU----UGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 118248 0.67 0.999238
Target:  5'- gUCGGCGGGCUGgAgGucggccGGGGCGGCGGc -3'
miRNA:   3'- aAGUUGUUCGACgUgC------UCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 117342 0.75 0.891358
Target:  5'- -gCAGCGAGCUgaGCACGAucucguugGAGCGGCGGg -3'
miRNA:   3'- aaGUUGUUCGA--CGUGCU--------CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 114541 0.66 0.999473
Target:  5'- ---cGCGAGCUGCGCGAGcuGuucuucggccaggcGCAGCGu -3'
miRNA:   3'- aaguUGUUCGACGUGCUC--U--------------UGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 113157 0.69 0.993583
Target:  5'- gUCAGCGuguAGCgcGCGCGGGcGGCGGCGGu -3'
miRNA:   3'- aAGUUGU---UCGa-CGUGCUC-UUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 112366 0.7 0.988774
Target:  5'- -gCGGgGAGCUGCugGAacucggcacgcaGGGCGGCGAu -3'
miRNA:   3'- aaGUUgUUCGACGugCU------------CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 112084 0.72 0.967847
Target:  5'- gUCAGCAGGUcccguUGCGCGuccaggcgcggccGGGACGACGGc -3'
miRNA:   3'- aAGUUGUUCG-----ACGUGC-------------UCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 107109 0.66 0.999549
Target:  5'- gUCGcuGCGAGCcGCgcuucuuugaccgcgACGGGAACGACGu -3'
miRNA:   3'- aAGU--UGUUCGaCG---------------UGCUCUUGUUGCu -5'
10772 5' -48.3 NC_002794.1 + 106428 0.67 0.999063
Target:  5'- cUCAugGcGCUGUugGAGAA-GGCGGu -3'
miRNA:   3'- aAGUugUuCGACGugCUCUUgUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 106312 0.66 0.999507
Target:  5'- -aCGACGAGCgcgacgcGCGCGAcGGGuCGACGGu -3'
miRNA:   3'- aaGUUGUUCGa------CGUGCU-CUU-GUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 106262 0.67 0.999206
Target:  5'- -cCGGCGAGCgccGCGCGucgcgccgccucGGACGGCGAg -3'
miRNA:   3'- aaGUUGUUCGa--CGUGCu-----------CUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 105862 0.68 0.995968
Target:  5'- -aCGACGugAGCgGCGcCGAGGACGugGGg -3'
miRNA:   3'- aaGUUGU--UCGaCGU-GCUCUUGUugCU- -5'
10772 5' -48.3 NC_002794.1 + 103895 0.69 0.994479
Target:  5'- -gCGACGAGCaGCgggGCGAGAACGccgcgcaacgcgGCGAg -3'
miRNA:   3'- aaGUUGUUCGaCG---UGCUCUUGU------------UGCU- -5'
10772 5' -48.3 NC_002794.1 + 103868 0.76 0.852915
Target:  5'- -cCGACGAGa-GCgACGAGAGCGACGAg -3'
miRNA:   3'- aaGUUGUUCgaCG-UGCUCUUGUUGCU- -5'
10772 5' -48.3 NC_002794.1 + 103628 0.68 0.997573
Target:  5'- aUCuGCucguuGCUGUACGGGGACAGguCGAg -3'
miRNA:   3'- aAGuUGuu---CGACGUGCUCUUGUU--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.