Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10772 | 5' | -48.3 | NC_002794.1 | + | 94772 | 0.66 | 0.999689 |
Target: 5'- gUCGACGAggcGCUGgGCGAguucGAGCGGCa- -3' miRNA: 3'- aAGUUGUU---CGACgUGCU----CUUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 101637 | 0.66 | 0.999689 |
Target: 5'- gUCcGCGAGCgUGgGCGGGcgGGCGGCGGu -3' miRNA: 3'- aAGuUGUUCG-ACgUGCUC--UUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 176936 | 0.66 | 0.999689 |
Target: 5'- aUCGugGccGCUGagugaaACGGGGGCAGCGGg -3' miRNA: 3'- aAGUugUu-CGACg-----UGCUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 103581 | 0.66 | 0.999755 |
Target: 5'- -cCGACGAGCaGCGguCGGGcaGGCAGCGGc -3' miRNA: 3'- aaGUUGUUCGaCGU--GCUC--UUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 64863 | 0.66 | 0.999755 |
Target: 5'- cUCGACGuGCcGCucgACGAGGACGaagACGAg -3' miRNA: 3'- aAGUUGUuCGaCG---UGCUCUUGU---UGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 86933 | 0.66 | 0.999507 |
Target: 5'- --gGGCAGGCgGgGCGGGAucCGGCGAg -3' miRNA: 3'- aagUUGUUCGaCgUGCUCUu-GUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 106312 | 0.66 | 0.999507 |
Target: 5'- -aCGACGAGCgcgacgcGCGCGAcGGGuCGACGGu -3' miRNA: 3'- aaGUUGUUCGa------CGUGCU-CUU-GUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 190983 | 0.67 | 0.999063 |
Target: 5'- --gAGCAGGCaGCGCGGcGACGGCGu -3' miRNA: 3'- aagUUGUUCGaCGUGCUcUUGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 106428 | 0.67 | 0.999063 |
Target: 5'- cUCAugGcGCUGUugGAGAA-GGCGGu -3' miRNA: 3'- aAGUugUuCGACGugCUCUUgUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 91195 | 0.67 | 0.999063 |
Target: 5'- -cCGGCGAcGCUGUuCGcGGACGGCGAc -3' miRNA: 3'- aaGUUGUU-CGACGuGCuCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 142174 | 0.67 | 0.999063 |
Target: 5'- -gCAGCGucGGCaGCGCGAGgAGCGGCa- -3' miRNA: 3'- aaGUUGU--UCGaCGUGCUC-UUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 57822 | 0.67 | 0.999063 |
Target: 5'- cUCGACGgccaGGCcuacaGCACGcuGGACAACGAg -3' miRNA: 3'- aAGUUGU----UCGa----CGUGCu-CUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 40642 | 0.67 | 0.999238 |
Target: 5'- ---cGCGAGCUGaGCGGGcAGCGACGu -3' miRNA: 3'- aaguUGUUCGACgUGCUC-UUGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 118248 | 0.67 | 0.999238 |
Target: 5'- gUCGGCGGGCUGgAgGucggccGGGGCGGCGGc -3' miRNA: 3'- aAGUUGUUCGACgUgC------UCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 106262 | 0.67 | 0.999206 |
Target: 5'- -cCGGCGAGCgccGCGCGucgcgccgccucGGACGGCGAg -3' miRNA: 3'- aaGUUGUUCGa--CGUGCu-----------CUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 84278 | 0.66 | 0.999385 |
Target: 5'- aUUCcGC-AGCUGCcgACgGGGAGCGGCGGc -3' miRNA: 3'- -AAGuUGuUCGACG--UG-CUCUUGUUGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 142607 | 0.66 | 0.999385 |
Target: 5'- --uGACGAGCUggcGCACGGGcgaguACAGCGc -3' miRNA: 3'- aagUUGUUCGA---CGUGCUCu----UGUUGCu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 96444 | 0.66 | 0.999385 |
Target: 5'- cUCAACGAGCUGCAgaaaggcuucUGGGcuCAcguGCGGg -3' miRNA: 3'- aAGUUGUUCGACGU----------GCUCuuGU---UGCU- -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 181580 | 0.66 | 0.999385 |
Target: 5'- aUCGACAGGCUGCGgGcc-GCGACc- -3' miRNA: 3'- aAGUUGUUCGACGUgCucuUGUUGcu -5' |
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10772 | 5' | -48.3 | NC_002794.1 | + | 114541 | 0.66 | 0.999473 |
Target: 5'- ---cGCGAGCUGCGCGAGcuGuucuucggccaggcGCAGCGu -3' miRNA: 3'- aaguUGUUCGACGUGCUC--U--------------UGUUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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