miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10773 3' -58.7 NC_002794.1 + 149957 0.66 0.881392
Target:  5'- uGUCGGGAcgUGGCCgA-CCUGCcGCGGa -3'
miRNA:   3'- -CAGUUCUugGCCGGgUaGGGCG-CGCC- -5'
10773 3' -58.7 NC_002794.1 + 182505 0.66 0.881392
Target:  5'- gGUCAGGuacgcguAgCGGagcaCCGUCCaccaGCGCGGc -3'
miRNA:   3'- -CAGUUCu------UgGCCg---GGUAGGg---CGCGCC- -5'
10773 3' -58.7 NC_002794.1 + 121364 0.66 0.881392
Target:  5'- cGUCGAcggcguccGAGCCGGCCgCcgCCgGgacCGCGGc -3'
miRNA:   3'- -CAGUU--------CUUGGCCGG-GuaGGgC---GCGCC- -5'
10773 3' -58.7 NC_002794.1 + 124178 0.66 0.881392
Target:  5'- cGUCGgggagGGGACUGGuUUCGUCCgGuCGCGGu -3'
miRNA:   3'- -CAGU-----UCUUGGCC-GGGUAGGgC-GCGCC- -5'
10773 3' -58.7 NC_002794.1 + 194507 0.66 0.881392
Target:  5'- -------cCCGGCCCGcggCCCGCGUGc -3'
miRNA:   3'- caguucuuGGCCGGGUa--GGGCGCGCc -5'
10773 3' -58.7 NC_002794.1 + 183674 0.66 0.874547
Target:  5'- -cCGAGcGCCGacgggucgagcGCCCG-CCgCGCGCGGc -3'
miRNA:   3'- caGUUCuUGGC-----------CGGGUaGG-GCGCGCC- -5'
10773 3' -58.7 NC_002794.1 + 72444 0.66 0.874547
Target:  5'- --gAGGGACCGgcggcgccccgcGCCCGgcCCCGCgGCGGc -3'
miRNA:   3'- cagUUCUUGGC------------CGGGUa-GGGCG-CGCC- -5'
10773 3' -58.7 NC_002794.1 + 182558 0.66 0.874547
Target:  5'- -----cGGCCGGCaCCGUCaccgggaucuCCGUGCGGg -3'
miRNA:   3'- caguucUUGGCCG-GGUAG----------GGCGCGCC- -5'
10773 3' -58.7 NC_002794.1 + 15269 0.66 0.874547
Target:  5'- cGUCGGcGAGCCgcgcGGCUCccUCCGCGCGa -3'
miRNA:   3'- -CAGUU-CUUGG----CCGGGuaGGGCGCGCc -5'
10773 3' -58.7 NC_002794.1 + 110228 0.66 0.868215
Target:  5'- cGUCc-GGAUCGaGUCCuccgcggcggagguuUCCCGCGCGGc -3'
miRNA:   3'- -CAGuuCUUGGC-CGGGu--------------AGGGCGCGCC- -5'
10773 3' -58.7 NC_002794.1 + 36911 0.66 0.867502
Target:  5'- gGUCGcGGcGCCGGCCCcgCgaCCGCGgaGGa -3'
miRNA:   3'- -CAGU-UCuUGGCCGGGuaG--GGCGCg-CC- -5'
10773 3' -58.7 NC_002794.1 + 47319 0.66 0.867502
Target:  5'- -cCGAGggUgGgguGCCCGgcUCCCGCgGCGGc -3'
miRNA:   3'- caGUUCuuGgC---CGGGU--AGGGCG-CGCC- -5'
10773 3' -58.7 NC_002794.1 + 20406 0.66 0.867502
Target:  5'- -cCGGGAGCggggccacaCGGUCUAcCCCGCGcCGGa -3'
miRNA:   3'- caGUUCUUG---------GCCGGGUaGGGCGC-GCC- -5'
10773 3' -58.7 NC_002794.1 + 124411 0.66 0.866787
Target:  5'- cGUCGGGGcGCCGuccGCCgCGgucucucUCCCGCGCGu -3'
miRNA:   3'- -CAGUUCU-UGGC---CGG-GU-------AGGGCGCGCc -5'
10773 3' -58.7 NC_002794.1 + 189103 0.66 0.866787
Target:  5'- uUCAGGAGCCcgaaacgGGCCaggugGUCCaaGUGCGGg -3'
miRNA:   3'- cAGUUCUUGG-------CCGGg----UAGGg-CGCGCC- -5'
10773 3' -58.7 NC_002794.1 + 72714 0.66 0.865351
Target:  5'- -cCGAccACCGuGCCCAugacggccccgcgcUCCCGCgGCGGc -3'
miRNA:   3'- caGUUcuUGGC-CGGGU--------------AGGGCG-CGCC- -5'
10773 3' -58.7 NC_002794.1 + 68870 0.66 0.860263
Target:  5'- cUCGGGcucGCCGGCCUcgCCCGUucccaCGGc -3'
miRNA:   3'- cAGUUCu--UGGCCGGGuaGGGCGc----GCC- -5'
10773 3' -58.7 NC_002794.1 + 121315 0.66 0.860263
Target:  5'- aUCGGcGGuuGGCCCucgaggCgCCGCGCGGc -3'
miRNA:   3'- cAGUUcUUggCCGGGua----G-GGCGCGCC- -5'
10773 3' -58.7 NC_002794.1 + 71247 0.66 0.860263
Target:  5'- -gCGuGGACCGGCaCGUagaacuugaggUCCGCGCGGu -3'
miRNA:   3'- caGUuCUUGGCCGgGUA-----------GGGCGCGCC- -5'
10773 3' -58.7 NC_002794.1 + 191524 0.66 0.860263
Target:  5'- -cCGGGcgUCGGCCCGcgccUCCCGcCGCa- -3'
miRNA:   3'- caGUUCuuGGCCGGGU----AGGGC-GCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.