miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10773 5' -52.9 NC_002794.1 + 113677 0.66 0.988614
Target:  5'- cGGCgagcagGCCCGccaccgucggCAGCGccagGUUCUggcUCAGGg -3'
miRNA:   3'- -CCGa-----CGGGCa---------GUCGCa---CAAGA---AGUUC- -5'
10773 5' -52.9 NC_002794.1 + 19986 0.66 0.985475
Target:  5'- gGGCUGUCCGUCcugguGGCGcUGcgCaaCAAGa -3'
miRNA:   3'- -CCGACGGGCAG-----UCGC-ACaaGaaGUUC- -5'
10773 5' -52.9 NC_002794.1 + 15020 0.66 0.983677
Target:  5'- uGGCUGCUCGUCgucaccuuccuGGUGcUGUUCaUCGc- -3'
miRNA:   3'- -CCGACGGGCAG-----------UCGC-ACAAGaAGUuc -5'
10773 5' -52.9 NC_002794.1 + 182875 0.66 0.981716
Target:  5'- uGGC-GCCCaccGUCGGCGUGaUCUcCAc- -3'
miRNA:   3'- -CCGaCGGG---CAGUCGCACaAGAaGUuc -5'
10773 5' -52.9 NC_002794.1 + 80446 0.67 0.975792
Target:  5'- cGGCcgccgGCCCGUCGGCGgcccgcugcccgUCUUCc-- -3'
miRNA:   3'- -CCGa----CGGGCAGUCGCaca---------AGAAGuuc -5'
10773 5' -52.9 NC_002794.1 + 19537 0.67 0.971511
Target:  5'- cGGCgcgGCCCGcCGGUGUcGgacccggacugCUUCGAGg -3'
miRNA:   3'- -CCGa--CGGGCaGUCGCA-Caa---------GAAGUUC- -5'
10773 5' -52.9 NC_002794.1 + 112841 0.68 0.962755
Target:  5'- cGGCUGCUCGUCGGCGcGccgCagCAGc -3'
miRNA:   3'- -CCGACGGGCAGUCGCaCaa-GaaGUUc -5'
10773 5' -52.9 NC_002794.1 + 137347 0.68 0.94724
Target:  5'- cGGCUcgGCgUCGUCGGgGUcUUCUUCGAGc -3'
miRNA:   3'- -CCGA--CG-GGCAGUCgCAcAAGAAGUUC- -5'
10773 5' -52.9 NC_002794.1 + 113147 0.69 0.933146
Target:  5'- gGGCggGCgCGUCAGCGUGUagcgCgcgCGGGc -3'
miRNA:   3'- -CCGa-CGgGCAGUCGCACAa---Gaa-GUUC- -5'
10773 5' -52.9 NC_002794.1 + 104455 0.69 0.933146
Target:  5'- cGGCccgaGCCCGggCGGCGUGUg---CAGGa -3'
miRNA:   3'- -CCGa---CGGGCa-GUCGCACAagaaGUUC- -5'
10773 5' -52.9 NC_002794.1 + 137058 0.74 0.729484
Target:  5'- gGGauCUGCCCGUCGGCGgGcUCUUCGc- -3'
miRNA:   3'- -CC--GACGGGCAGUCGCaCaAGAAGUuc -5'
10773 5' -52.9 NC_002794.1 + 92984 1.1 0.006069
Target:  5'- gGGCUGCCCGUCAGCGUGUUCUUCAAGc -3'
miRNA:   3'- -CCGACGGGCAGUCGCACAAGAAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.