miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 3' -51.7 NC_002794.1 + 138106 0.66 0.994081
Target:  5'- aCCGucUGCAG-GAGGGCGUGGuGcUCg -3'
miRNA:   3'- -GGUucACGUCgUUCUCGCACCuCaAG- -5'
10774 3' -51.7 NC_002794.1 + 98430 0.66 0.994081
Target:  5'- uCCAGGUGCAaCGGGAcauGCGUa-AGUUCg -3'
miRNA:   3'- -GGUUCACGUcGUUCU---CGCAccUCAAG- -5'
10774 3' -51.7 NC_002794.1 + 86986 0.66 0.993167
Target:  5'- aCGAGguccgGCGGCuuucGGcGGCGUGG-GUUCc -3'
miRNA:   3'- gGUUCa----CGUCGu---UC-UCGCACCuCAAG- -5'
10774 3' -51.7 NC_002794.1 + 154210 0.66 0.992143
Target:  5'- aCGcuGGcGCGGCAAG-GCGUGGAccUCg -3'
miRNA:   3'- gGU--UCaCGUCGUUCuCGCACCUcaAG- -5'
10774 3' -51.7 NC_002794.1 + 51056 0.66 0.992143
Target:  5'- uCCGAGacgGCGGCGAcggcgaccuccGAGCGUGGcGcgCu -3'
miRNA:   3'- -GGUUCa--CGUCGUU-----------CUCGCACCuCaaG- -5'
10774 3' -51.7 NC_002794.1 + 38124 0.66 0.992143
Target:  5'- gCCGcgc-CAGCuGGGGCGUGGAGUc- -3'
miRNA:   3'- -GGUucacGUCGuUCUCGCACCUCAag -5'
10774 3' -51.7 NC_002794.1 + 94042 0.67 0.988328
Target:  5'- cCCGAGaGCGGCGgcggugcgGGGGCGgcgGGGGg-- -3'
miRNA:   3'- -GGUUCaCGUCGU--------UCUCGCa--CCUCaag -5'
10774 3' -51.7 NC_002794.1 + 115885 0.67 0.986779
Target:  5'- uCCGGG-GCGuccGC-GGAGCGcggGGGGUUCg -3'
miRNA:   3'- -GGUUCaCGU---CGuUCUCGCa--CCUCAAG- -5'
10774 3' -51.7 NC_002794.1 + 56040 0.67 0.981176
Target:  5'- -----aGCGGCAgaAGAGCGUGGgcagguggaAGUUCc -3'
miRNA:   3'- gguucaCGUCGU--UCUCGCACC---------UCAAG- -5'
10774 3' -51.7 NC_002794.1 + 141350 0.68 0.978961
Target:  5'- aCGAGaGCAGCGacgAGAGCGgcGGAGa-- -3'
miRNA:   3'- gGUUCaCGUCGU---UCUCGCa-CCUCaag -5'
10774 3' -51.7 NC_002794.1 + 144381 0.68 0.978961
Target:  5'- cCCGGGUGCucuGCAAcuGCGaGGAGUg- -3'
miRNA:   3'- -GGUUCACGu--CGUUcuCGCaCCUCAag -5'
10774 3' -51.7 NC_002794.1 + 179960 0.69 0.964925
Target:  5'- gCGAGcGaCAGCAGGAGCGgcaGGAGc-- -3'
miRNA:   3'- gGUUCaC-GUCGUUCUCGCa--CCUCaag -5'
10774 3' -51.7 NC_002794.1 + 149347 0.69 0.957797
Target:  5'- gCCGGG-GUcGCGGGGGCGUGGAcGgagUCc -3'
miRNA:   3'- -GGUUCaCGuCGUUCUCGCACCU-Ca--AG- -5'
10774 3' -51.7 NC_002794.1 + 141424 0.69 0.949738
Target:  5'- cUCGGGgGCGGCGGGGGCGccgGGGGcgCc -3'
miRNA:   3'- -GGUUCaCGUCGUUCUCGCa--CCUCaaG- -5'
10774 3' -51.7 NC_002794.1 + 145924 0.7 0.940714
Target:  5'- gCCGAGcggagggGcCGGCGAGAGCGguucgGGAGUc- -3'
miRNA:   3'- -GGUUCa------C-GUCGUUCUCGCa----CCUCAag -5'
10774 3' -51.7 NC_002794.1 + 185038 0.7 0.930705
Target:  5'- uCCAAGUacgGCAGCAAcAGCGUGGucugCa -3'
miRNA:   3'- -GGUUCA---CGUCGUUcUCGCACCucaaG- -5'
10774 3' -51.7 NC_002794.1 + 113837 0.7 0.930705
Target:  5'- uCCAGGUGCuucuGCAGccuGGCGUGcAGUUCc -3'
miRNA:   3'- -GGUUCACGu---CGUUc--UCGCACcUCAAG- -5'
10774 3' -51.7 NC_002794.1 + 122949 0.72 0.880791
Target:  5'- aCC-GGUGCGGCuGGAGCGUgagccuGGGGUg- -3'
miRNA:   3'- -GGuUCACGUCGuUCUCGCA------CCUCAag -5'
10774 3' -51.7 NC_002794.1 + 114614 0.72 0.880791
Target:  5'- uCCAGGUggcGCAGCAGGuccucGGCGcGGAGcUCg -3'
miRNA:   3'- -GGUUCA---CGUCGUUC-----UCGCaCCUCaAG- -5'
10774 3' -51.7 NC_002794.1 + 23908 0.73 0.825083
Target:  5'- gCCGAGUGCAGC---AGCGUGGGc--- -3'
miRNA:   3'- -GGUUCACGUCGuucUCGCACCUcaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.