Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10774 | 5' | -58.1 | NC_002794.1 | + | 15353 | 0.66 | 0.867154 |
Target: 5'- gAUGGAa-UCGCacGCUCU-CGaCCGCCUg -3' miRNA: 3'- -UACCUgaAGCG--CGAGAuGC-GGCGGAg -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 92461 | 0.66 | 0.867154 |
Target: 5'- -cGGACUUcaugagCGCGCUCU-CGg-GCCUCa -3' miRNA: 3'- uaCCUGAA------GCGCGAGAuGCggCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 148058 | 0.66 | 0.86642 |
Target: 5'- --cGGCUcCGCGCUCUGggaGCCgggagugGCCUCg -3' miRNA: 3'- uacCUGAaGCGCGAGAUg--CGG-------CGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 138715 | 0.66 | 0.859723 |
Target: 5'- cGUGGAC-UCGCG-UCga-GCCGgCUCg -3' miRNA: 3'- -UACCUGaAGCGCgAGaugCGGCgGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 39659 | 0.66 | 0.859723 |
Target: 5'- gGUGGuCUUCGCcCUCUgccGCGCggugCGCUUCu -3' miRNA: 3'- -UACCuGAAGCGcGAGA---UGCG----GCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 192634 | 0.66 | 0.859723 |
Target: 5'- -cGGGCggC-CGCUCcagccGCGCCGCCg- -3' miRNA: 3'- uaCCUGaaGcGCGAGa----UGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 94983 | 0.66 | 0.859723 |
Target: 5'- -gGGGCUgga-GCUCUGuCGCCGCUUg -3' miRNA: 3'- uaCCUGAagcgCGAGAU-GCGGCGGAg -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 96391 | 0.66 | 0.859723 |
Target: 5'- aGUGGAUggUCGCGC-CUuacCGgCGCUUCu -3' miRNA: 3'- -UACCUGa-AGCGCGaGAu--GCgGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 50839 | 0.66 | 0.852094 |
Target: 5'- -cGGGCgUCGCGaUCaACGCCGUCa- -3' miRNA: 3'- uaCCUGaAGCGCgAGaUGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 10724 | 0.66 | 0.852094 |
Target: 5'- -cGGACgaCGCGCUCacCGaCCGCUUa -3' miRNA: 3'- uaCCUGaaGCGCGAGauGC-GGCGGAg -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 113412 | 0.66 | 0.852094 |
Target: 5'- -cGGAgCUgguccagcacgUCgGCGUUCUgccGCGCCGUCUCg -3' miRNA: 3'- uaCCU-GA-----------AG-CGCGAGA---UGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 50775 | 0.66 | 0.852094 |
Target: 5'- -gGcGACggCGCGuCUCggGCGgCGCCUCc -3' miRNA: 3'- uaC-CUGaaGCGC-GAGa-UGCgGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 115919 | 0.66 | 0.851321 |
Target: 5'- gGUGGACUUgGCGCggcgGCGggccggcCCGCCg- -3' miRNA: 3'- -UACCUGAAgCGCGaga-UGC-------GGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 47357 | 0.66 | 0.844273 |
Target: 5'- -cGGACgUUCGCGCUCaa-GCCgagGCCg- -3' miRNA: 3'- uaCCUG-AAGCGCGAGaugCGG---CGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 148518 | 0.66 | 0.844273 |
Target: 5'- cUGGAa---GCGg-CUGCGCCGCUUCc -3' miRNA: 3'- uACCUgaagCGCgaGAUGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 58309 | 0.66 | 0.844273 |
Target: 5'- -cGaGACcgcCGCGCUCUgcACGCCGCgcgugCUCg -3' miRNA: 3'- uaC-CUGaa-GCGCGAGA--UGCGGCG-----GAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 107414 | 0.66 | 0.844273 |
Target: 5'- -gGcGGCUaugUCcuGgGCUCUGCGgCGCCUCg -3' miRNA: 3'- uaC-CUGA---AG--CgCGAGAUGCgGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 93745 | 0.66 | 0.844273 |
Target: 5'- -cGaGAC--CGUGCUCUucgACGCCGaCCUCu -3' miRNA: 3'- uaC-CUGaaGCGCGAGA---UGCGGC-GGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 61862 | 0.66 | 0.836265 |
Target: 5'- cAUGGACgacgccgCGCGCcgUCgucgGCGCCGCg-- -3' miRNA: 3'- -UACCUGaa-----GCGCG--AGa---UGCGGCGgag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 184514 | 0.66 | 0.836265 |
Target: 5'- -cGGGCcccgCGCGCggcgCgggcgACGCCGCC-Ca -3' miRNA: 3'- uaCCUGaa--GCGCGa---Ga----UGCGGCGGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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