Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10774 | 5' | -58.1 | NC_002794.1 | + | 92851 | 1.08 | 0.00249 |
Target: 5'- cAUGGACUUCGCGCUCUACGCCGCCUCg -3' miRNA: 3'- -UACCUGAAGCGCGAGAUGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 99592 | 0.79 | 0.216019 |
Target: 5'- -aGGGCgcggcggcggcgCGCGCUC-GCGCCGCCUCg -3' miRNA: 3'- uaCCUGaa----------GCGCGAGaUGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 41368 | 0.78 | 0.257644 |
Target: 5'- -cGGcCUUCGCGCUC-GCGgCGCCUCc -3' miRNA: 3'- uaCCuGAAGCGCGAGaUGCgGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 192294 | 0.72 | 0.520128 |
Target: 5'- -cGGagaccaGCUUCGCGCUCguccgcgcuCGCCGCCg- -3' miRNA: 3'- uaCC------UGAAGCGCGAGau-------GCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 149675 | 0.72 | 0.489694 |
Target: 5'- -gGGGCgcgUCGCGCUCgacuggccgcggGgGCCGCCUg -3' miRNA: 3'- uaCCUGa--AGCGCGAGa-----------UgCGGCGGAg -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 194247 | 0.72 | 0.539522 |
Target: 5'- cGUGGuCcgCGaacaGCUCgcccgACGCCGCCUCg -3' miRNA: 3'- -UACCuGaaGCg---CGAGa----UGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 62496 | 0.72 | 0.520128 |
Target: 5'- aGUGGACggCGgGCg--GCGCCGCCg- -3' miRNA: 3'- -UACCUGaaGCgCGagaUGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 108190 | 0.71 | 0.569048 |
Target: 5'- -cGGACUgcgaGCgGCgCUGCGCCGCCg- -3' miRNA: 3'- uaCCUGAag--CG-CGaGAUGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 66824 | 0.71 | 0.588956 |
Target: 5'- -aGGGCgcccggCGCGaCUCcggGCGCCGCCgUCg -3' miRNA: 3'- uaCCUGaa----GCGC-GAGa--UGCGGCGG-AG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 116867 | 0.71 | 0.550294 |
Target: 5'- -cGGcCgugUCGCGCUCgucaggggggcgccgGCGCCGUCUCc -3' miRNA: 3'- uaCCuGa--AGCGCGAGa--------------UGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 152342 | 0.7 | 0.62908 |
Target: 5'- -cGGuCcaCGCGCUCUACGgCCGCUUg -3' miRNA: 3'- uaCCuGaaGCGCGAGAUGC-GGCGGAg -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 106263 | 0.7 | 0.639135 |
Target: 5'- -cGGcgaGCgcCGCGCgucGCGCCGCCUCg -3' miRNA: 3'- uaCC---UGaaGCGCGagaUGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 126116 | 0.7 | 0.607981 |
Target: 5'- cUGGGCgcCGCGCucgUCUGCGCCGguuucuggccggcCCUCu -3' miRNA: 3'- uACCUGaaGCGCG---AGAUGCGGC-------------GGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 64215 | 0.7 | 0.649184 |
Target: 5'- -cGGGCccaUCGaacuGCacCUGCGCCGCCUCg -3' miRNA: 3'- uaCCUGa--AGCg---CGa-GAUGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 146967 | 0.7 | 0.65922 |
Target: 5'- cAUGGACcgccugUCGCGaggUCgGCGCCGCCg- -3' miRNA: 3'- -UACCUGa-----AGCGCg--AGaUGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 17420 | 0.69 | 0.718709 |
Target: 5'- -cGGcCaUCGCGgUCUccGCGCCGCCg- -3' miRNA: 3'- uaCCuGaAGCGCgAGA--UGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 95570 | 0.69 | 0.699074 |
Target: 5'- -aGGACga-GCgGCUCUAUGUCGgCUCg -3' miRNA: 3'- uaCCUGaagCG-CGAGAUGCGGCgGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 134469 | 0.69 | 0.708923 |
Target: 5'- -gGGACg--GCGCUCU-CGUCGCCa- -3' miRNA: 3'- uaCCUGaagCGCGAGAuGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 190657 | 0.69 | 0.699074 |
Target: 5'- -aGGAUcacgUCGCGCcCgccGCGCCGCCg- -3' miRNA: 3'- uaCCUGa---AGCGCGaGa--UGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 46165 | 0.69 | 0.718709 |
Target: 5'- cUGGA--UCGCGCaCaGCGCCGCCg- -3' miRNA: 3'- uACCUgaAGCGCGaGaUGCGGCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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