miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 5' -58.1 NC_002794.1 + 190657 0.69 0.699074
Target:  5'- -aGGAUcacgUCGCGCcCgccGCGCCGCCg- -3'
miRNA:   3'- uaCCUGa---AGCGCGaGa--UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 111733 0.69 0.718709
Target:  5'- -cGGGCgaaCGCGCUCgucgagcugGCGCCGCg-- -3'
miRNA:   3'- uaCCUGaa-GCGCGAGa--------UGCGGCGgag -5'
10774 5' -58.1 NC_002794.1 + 17420 0.69 0.718709
Target:  5'- -cGGcCaUCGCGgUCUccGCGCCGCCg- -3'
miRNA:   3'- uaCCuGaAGCGCgAGA--UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 12945 0.68 0.766392
Target:  5'- -cGGACUUCGUgGCg-UugGCCGUgUCg -3'
miRNA:   3'- uaCCUGAAGCG-CGagAugCGGCGgAG- -5'
10774 5' -58.1 NC_002794.1 + 193376 0.68 0.766392
Target:  5'- -cGGGC--CGCGCUCcucgccguCGuCCGCCUCg -3'
miRNA:   3'- uaCCUGaaGCGCGAGau------GC-GGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 67209 0.68 0.74475
Target:  5'- -cGGGCggUGCGCUCgGCGCCgggcggcuaaccgcGUCUCg -3'
miRNA:   3'- uaCCUGaaGCGCGAGaUGCGG--------------CGGAG- -5'
10774 5' -58.1 NC_002794.1 + 105938 0.68 0.75705
Target:  5'- -cGGGCUggaCGCGCUgUACgaacggcuggggGCCGCCg- -3'
miRNA:   3'- uaCCUGAa--GCGCGAgAUG------------CGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 72908 0.68 0.738058
Target:  5'- ---cACcgUCGCGCUCgcCGCCGCCgUCg -3'
miRNA:   3'- uaccUGa-AGCGCGAGauGCGGCGG-AG- -5'
10774 5' -58.1 NC_002794.1 + 90086 0.67 0.775617
Target:  5'- gAUGuGGC-UCGgcaCGCUCUGCGCCGCg-- -3'
miRNA:   3'- -UAC-CUGaAGC---GCGAGAUGCGGCGgag -5'
10774 5' -58.1 NC_002794.1 + 93050 0.67 0.784719
Target:  5'- cUGGcCUUCcUGCUCUACGCCuuccacgagcGCCUg -3'
miRNA:   3'- uACCuGAAGcGCGAGAUGCGG----------CGGAg -5'
10774 5' -58.1 NC_002794.1 + 85047 0.67 0.775617
Target:  5'- -cGGGCc-CGCGCUCgacgaccggccACGCCGCgUCu -3'
miRNA:   3'- uaCCUGaaGCGCGAGa----------UGCGGCGgAG- -5'
10774 5' -58.1 NC_002794.1 + 46194 0.67 0.784719
Target:  5'- --cGGCacCGCGCUCgcuCGCCGCCg- -3'
miRNA:   3'- uacCUGaaGCGCGAGau-GCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 134762 0.67 0.811197
Target:  5'- -cGGACgUCGCGCccaUACGCgaCGuCCUCg -3'
miRNA:   3'- uaCCUGaAGCGCGag-AUGCG--GC-GGAG- -5'
10774 5' -58.1 NC_002794.1 + 40340 0.67 0.81972
Target:  5'- -cGGACg-CGCcaccgGCg--GCGCCGCCUCu -3'
miRNA:   3'- uaCCUGaaGCG-----CGagaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 93971 0.67 0.811197
Target:  5'- -aGGACUUuucccugacCGCGCUCgGCGCggaCGCCg- -3'
miRNA:   3'- uaCCUGAA---------GCGCGAGaUGCG---GCGGag -5'
10774 5' -58.1 NC_002794.1 + 14921 0.67 0.807743
Target:  5'- -cGGGCUcgcggucccgaCGUGCUCUcgaucggcucgccCGCCGCCUCg -3'
miRNA:   3'- uaCCUGAa----------GCGCGAGAu------------GCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 38483 0.66 0.828079
Target:  5'- uAUGGGCggaggaaGCGCggcggcgccggUCgcCGCCGCCUCc -3'
miRNA:   3'- -UACCUGaag----CGCG-----------AGauGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 192634 0.66 0.859723
Target:  5'- -cGGGCggC-CGCUCcagccGCGCCGCCg- -3'
miRNA:   3'- uaCCUGaaGcGCGAGa----UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 113412 0.66 0.852094
Target:  5'- -cGGAgCUgguccagcacgUCgGCGUUCUgccGCGCCGUCUCg -3'
miRNA:   3'- uaCCU-GA-----------AG-CGCGAGA---UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 47357 0.66 0.844273
Target:  5'- -cGGACgUUCGCGCUCaa-GCCgagGCCg- -3'
miRNA:   3'- uaCCUG-AAGCGCGAGaugCGG---CGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.