miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 5' -58.1 NC_002794.1 + 92851 1.08 0.00249
Target:  5'- cAUGGACUUCGCGCUCUACGCCGCCUCg -3'
miRNA:   3'- -UACCUGAAGCGCGAGAUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 99592 0.79 0.216019
Target:  5'- -aGGGCgcggcggcggcgCGCGCUC-GCGCCGCCUCg -3'
miRNA:   3'- uaCCUGaa----------GCGCGAGaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 41368 0.78 0.257644
Target:  5'- -cGGcCUUCGCGCUC-GCGgCGCCUCc -3'
miRNA:   3'- uaCCuGAAGCGCGAGaUGCgGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 149675 0.72 0.489694
Target:  5'- -gGGGCgcgUCGCGCUCgacuggccgcggGgGCCGCCUg -3'
miRNA:   3'- uaCCUGa--AGCGCGAGa-----------UgCGGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 192294 0.72 0.520128
Target:  5'- -cGGagaccaGCUUCGCGCUCguccgcgcuCGCCGCCg- -3'
miRNA:   3'- uaCC------UGAAGCGCGAGau-------GCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 62496 0.72 0.520128
Target:  5'- aGUGGACggCGgGCg--GCGCCGCCg- -3'
miRNA:   3'- -UACCUGaaGCgCGagaUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 194247 0.72 0.539522
Target:  5'- cGUGGuCcgCGaacaGCUCgcccgACGCCGCCUCg -3'
miRNA:   3'- -UACCuGaaGCg---CGAGa----UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 116867 0.71 0.550294
Target:  5'- -cGGcCgugUCGCGCUCgucaggggggcgccgGCGCCGUCUCc -3'
miRNA:   3'- uaCCuGa--AGCGCGAGa--------------UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 108190 0.71 0.569048
Target:  5'- -cGGACUgcgaGCgGCgCUGCGCCGCCg- -3'
miRNA:   3'- uaCCUGAag--CG-CGaGAUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 66824 0.71 0.588956
Target:  5'- -aGGGCgcccggCGCGaCUCcggGCGCCGCCgUCg -3'
miRNA:   3'- uaCCUGaa----GCGC-GAGa--UGCGGCGG-AG- -5'
10774 5' -58.1 NC_002794.1 + 126116 0.7 0.607981
Target:  5'- cUGGGCgcCGCGCucgUCUGCGCCGguuucuggccggcCCUCu -3'
miRNA:   3'- uACCUGaaGCGCG---AGAUGCGGC-------------GGAG- -5'
10774 5' -58.1 NC_002794.1 + 152342 0.7 0.62908
Target:  5'- -cGGuCcaCGCGCUCUACGgCCGCUUg -3'
miRNA:   3'- uaCCuGaaGCGCGAGAUGC-GGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 106263 0.7 0.639135
Target:  5'- -cGGcgaGCgcCGCGCgucGCGCCGCCUCg -3'
miRNA:   3'- uaCC---UGaaGCGCGagaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 64215 0.7 0.649184
Target:  5'- -cGGGCccaUCGaacuGCacCUGCGCCGCCUCg -3'
miRNA:   3'- uaCCUGa--AGCg---CGa-GAUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 146967 0.7 0.65922
Target:  5'- cAUGGACcgccugUCGCGaggUCgGCGCCGCCg- -3'
miRNA:   3'- -UACCUGa-----AGCGCg--AGaUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 61118 0.69 0.679222
Target:  5'- -gGGACcagcUCGUGCUCUGCG-CGCCc- -3'
miRNA:   3'- uaCCUGa---AGCGCGAGAUGCgGCGGag -5'
10774 5' -58.1 NC_002794.1 + 98955 0.69 0.689171
Target:  5'- -gGGGC-UCGUGCUggGCGCCGUCg- -3'
miRNA:   3'- uaCCUGaAGCGCGAgaUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 95570 0.69 0.699074
Target:  5'- -aGGACga-GCgGCUCUAUGUCGgCUCg -3'
miRNA:   3'- uaCCUGaagCG-CGAGAUGCGGCgGAG- -5'
10774 5' -58.1 NC_002794.1 + 190657 0.69 0.699074
Target:  5'- -aGGAUcacgUCGCGCcCgccGCGCCGCCg- -3'
miRNA:   3'- uaCCUGa---AGCGCGaGa--UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 134469 0.69 0.708923
Target:  5'- -gGGACg--GCGCUCU-CGUCGCCa- -3'
miRNA:   3'- uaCCUGaagCGCGAGAuGCGGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.