Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10774 | 5' | -58.1 | NC_002794.1 | + | 17420 | 0.69 | 0.718709 |
Target: 5'- -cGGcCaUCGCGgUCUccGCGCCGCCg- -3' miRNA: 3'- uaCCuGaAGCGCgAGA--UGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 111733 | 0.69 | 0.718709 |
Target: 5'- -cGGGCgaaCGCGCUCgucgagcugGCGCCGCg-- -3' miRNA: 3'- uaCCUGaa-GCGCGAGa--------UGCGGCGgag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 46165 | 0.69 | 0.718709 |
Target: 5'- cUGGA--UCGCGCaCaGCGCCGCCg- -3' miRNA: 3'- uACCUgaAGCGCGaGaUGCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 72908 | 0.68 | 0.738058 |
Target: 5'- ---cACcgUCGCGCUCgcCGCCGCCgUCg -3' miRNA: 3'- uaccUGa-AGCGCGAGauGCGGCGG-AG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 67209 | 0.68 | 0.74475 |
Target: 5'- -cGGGCggUGCGCUCgGCGCCgggcggcuaaccgcGUCUCg -3' miRNA: 3'- uaCCUGaaGCGCGAGaUGCGG--------------CGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 105938 | 0.68 | 0.75705 |
Target: 5'- -cGGGCUggaCGCGCUgUACgaacggcuggggGCCGCCg- -3' miRNA: 3'- uaCCUGAa--GCGCGAgAUG------------CGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 12945 | 0.68 | 0.766392 |
Target: 5'- -cGGACUUCGUgGCg-UugGCCGUgUCg -3' miRNA: 3'- uaCCUGAAGCG-CGagAugCGGCGgAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 193376 | 0.68 | 0.766392 |
Target: 5'- -cGGGC--CGCGCUCcucgccguCGuCCGCCUCg -3' miRNA: 3'- uaCCUGaaGCGCGAGau------GC-GGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 90086 | 0.67 | 0.775617 |
Target: 5'- gAUGuGGC-UCGgcaCGCUCUGCGCCGCg-- -3' miRNA: 3'- -UAC-CUGaAGC---GCGAGAUGCGGCGgag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 85047 | 0.67 | 0.775617 |
Target: 5'- -cGGGCc-CGCGCUCgacgaccggccACGCCGCgUCu -3' miRNA: 3'- uaCCUGaaGCGCGAGa----------UGCGGCGgAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 93050 | 0.67 | 0.784719 |
Target: 5'- cUGGcCUUCcUGCUCUACGCCuuccacgagcGCCUg -3' miRNA: 3'- uACCuGAAGcGCGAGAUGCGG----------CGGAg -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 46194 | 0.67 | 0.784719 |
Target: 5'- --cGGCacCGCGCUCgcuCGCCGCCg- -3' miRNA: 3'- uacCUGaaGCGCGAGau-GCGGCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 14921 | 0.67 | 0.807743 |
Target: 5'- -cGGGCUcgcggucccgaCGUGCUCUcgaucggcucgccCGCCGCCUCg -3' miRNA: 3'- uaCCUGAa----------GCGCGAGAu------------GCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 134762 | 0.67 | 0.811197 |
Target: 5'- -cGGACgUCGCGCccaUACGCgaCGuCCUCg -3' miRNA: 3'- uaCCUGaAGCGCGag-AUGCG--GC-GGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 93971 | 0.67 | 0.811197 |
Target: 5'- -aGGACUUuucccugacCGCGCUCgGCGCggaCGCCg- -3' miRNA: 3'- uaCCUGAA---------GCGCGAGaUGCG---GCGGag -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 40340 | 0.67 | 0.81972 |
Target: 5'- -cGGACg-CGCcaccgGCg--GCGCCGCCUCu -3' miRNA: 3'- uaCCUGaaGCG-----CGagaUGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 38483 | 0.66 | 0.828079 |
Target: 5'- uAUGGGCggaggaaGCGCggcggcgccggUCgcCGCCGCCUCc -3' miRNA: 3'- -UACCUGaag----CGCG-----------AGauGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 12416 | 0.66 | 0.834642 |
Target: 5'- -cGGACggCGCGCgccgacuggcagCUgucccgcgucaGCGcCCGCCUCa -3' miRNA: 3'- uaCCUGaaGCGCGa-----------GA-----------UGC-GGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 134950 | 0.66 | 0.836265 |
Target: 5'- uAUGuGGCgaagcCGCGCgaccccugCUuccACGCCGCCUCc -3' miRNA: 3'- -UAC-CUGaa---GCGCGa-------GA---UGCGGCGGAG- -5' |
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10774 | 5' | -58.1 | NC_002794.1 | + | 34462 | 0.66 | 0.836265 |
Target: 5'- -aGGACgaguaccUGCGCaccuucaagCUGCGCCGCCa- -3' miRNA: 3'- uaCCUGaa-----GCGCGa--------GAUGCGGCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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