miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 5' -58.1 NC_002794.1 + 184514 0.66 0.836265
Target:  5'- -cGGGCcccgCGCGCggcgCgggcgACGCCGCC-Ca -3'
miRNA:   3'- uaCCUGaa--GCGCGa---Ga----UGCGGCGGaG- -5'
10774 5' -58.1 NC_002794.1 + 61862 0.66 0.836265
Target:  5'- cAUGGACgacgccgCGCGCcgUCgucgGCGCCGCg-- -3'
miRNA:   3'- -UACCUGaa-----GCGCG--AGa---UGCGGCGgag -5'
10774 5' -58.1 NC_002794.1 + 91619 0.66 0.836265
Target:  5'- -aGGGCcaCGCcgacCUcCUGCGCCGCCUg -3'
miRNA:   3'- uaCCUGaaGCGc---GA-GAUGCGGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 12416 0.66 0.834642
Target:  5'- -cGGACggCGCGCgccgacuggcagCUgucccgcgucaGCGcCCGCCUCa -3'
miRNA:   3'- uaCCUGaaGCGCGa-----------GA-----------UGC-GGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 38483 0.66 0.828079
Target:  5'- uAUGGGCggaggaaGCGCggcggcgccggUCgcCGCCGCCUCc -3'
miRNA:   3'- -UACCUGaag----CGCG-----------AGauGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 40340 0.67 0.81972
Target:  5'- -cGGACg-CGCcaccgGCg--GCGCCGCCUCu -3'
miRNA:   3'- uaCCUGaaGCG-----CGagaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 134762 0.67 0.811197
Target:  5'- -cGGACgUCGCGCccaUACGCgaCGuCCUCg -3'
miRNA:   3'- uaCCUGaAGCGCGag-AUGCG--GC-GGAG- -5'
10774 5' -58.1 NC_002794.1 + 93971 0.67 0.811197
Target:  5'- -aGGACUUuucccugacCGCGCUCgGCGCggaCGCCg- -3'
miRNA:   3'- uaCCUGAA---------GCGCGAGaUGCG---GCGGag -5'
10774 5' -58.1 NC_002794.1 + 14921 0.67 0.807743
Target:  5'- -cGGGCUcgcggucccgaCGUGCUCUcgaucggcucgccCGCCGCCUCg -3'
miRNA:   3'- uaCCUGAa----------GCGCGAGAu------------GCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 93050 0.67 0.784719
Target:  5'- cUGGcCUUCcUGCUCUACGCCuuccacgagcGCCUg -3'
miRNA:   3'- uACCuGAAGcGCGAGAUGCGG----------CGGAg -5'
10774 5' -58.1 NC_002794.1 + 46194 0.67 0.784719
Target:  5'- --cGGCacCGCGCUCgcuCGCCGCCg- -3'
miRNA:   3'- uacCUGaaGCGCGAGau-GCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 85047 0.67 0.775617
Target:  5'- -cGGGCc-CGCGCUCgacgaccggccACGCCGCgUCu -3'
miRNA:   3'- uaCCUGaaGCGCGAGa----------UGCGGCGgAG- -5'
10774 5' -58.1 NC_002794.1 + 90086 0.67 0.775617
Target:  5'- gAUGuGGC-UCGgcaCGCUCUGCGCCGCg-- -3'
miRNA:   3'- -UAC-CUGaAGC---GCGAGAUGCGGCGgag -5'
10774 5' -58.1 NC_002794.1 + 12945 0.68 0.766392
Target:  5'- -cGGACUUCGUgGCg-UugGCCGUgUCg -3'
miRNA:   3'- uaCCUGAAGCG-CGagAugCGGCGgAG- -5'
10774 5' -58.1 NC_002794.1 + 193376 0.68 0.766392
Target:  5'- -cGGGC--CGCGCUCcucgccguCGuCCGCCUCg -3'
miRNA:   3'- uaCCUGaaGCGCGAGau------GC-GGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 105938 0.68 0.75705
Target:  5'- -cGGGCUggaCGCGCUgUACgaacggcuggggGCCGCCg- -3'
miRNA:   3'- uaCCUGAa--GCGCGAgAUG------------CGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 67209 0.68 0.74475
Target:  5'- -cGGGCggUGCGCUCgGCGCCgggcggcuaaccgcGUCUCg -3'
miRNA:   3'- uaCCUGaaGCGCGAGaUGCGG--------------CGGAG- -5'
10774 5' -58.1 NC_002794.1 + 72908 0.68 0.738058
Target:  5'- ---cACcgUCGCGCUCgcCGCCGCCgUCg -3'
miRNA:   3'- uaccUGa-AGCGCGAGauGCGGCGG-AG- -5'
10774 5' -58.1 NC_002794.1 + 17420 0.69 0.718709
Target:  5'- -cGGcCaUCGCGgUCUccGCGCCGCCg- -3'
miRNA:   3'- uaCCuGaAGCGCgAGA--UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 46165 0.69 0.718709
Target:  5'- cUGGA--UCGCGCaCaGCGCCGCCg- -3'
miRNA:   3'- uACCUgaAGCGCGaGaUGCGGCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.