miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 5' -58.1 NC_002794.1 + 10724 0.66 0.852094
Target:  5'- -cGGACgaCGCGCUCacCGaCCGCUUa -3'
miRNA:   3'- uaCCUGaaGCGCGAGauGC-GGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 12416 0.66 0.834642
Target:  5'- -cGGACggCGCGCgccgacuggcagCUgucccgcgucaGCGcCCGCCUCa -3'
miRNA:   3'- uaCCUGaaGCGCGa-----------GA-----------UGC-GGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 12945 0.68 0.766392
Target:  5'- -cGGACUUCGUgGCg-UugGCCGUgUCg -3'
miRNA:   3'- uaCCUGAAGCG-CGagAugCGGCGgAG- -5'
10774 5' -58.1 NC_002794.1 + 14921 0.67 0.807743
Target:  5'- -cGGGCUcgcggucccgaCGUGCUCUcgaucggcucgccCGCCGCCUCg -3'
miRNA:   3'- uaCCUGAa----------GCGCGAGAu------------GCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 15353 0.66 0.867154
Target:  5'- gAUGGAa-UCGCacGCUCU-CGaCCGCCUg -3'
miRNA:   3'- -UACCUgaAGCG--CGAGAuGC-GGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 17420 0.69 0.718709
Target:  5'- -cGGcCaUCGCGgUCUccGCGCCGCCg- -3'
miRNA:   3'- uaCCuGaAGCGCgAGA--UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 34462 0.66 0.836265
Target:  5'- -aGGACgaguaccUGCGCaccuucaagCUGCGCCGCCa- -3'
miRNA:   3'- uaCCUGaa-----GCGCGa--------GAUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 38483 0.66 0.828079
Target:  5'- uAUGGGCggaggaaGCGCggcggcgccggUCgcCGCCGCCUCc -3'
miRNA:   3'- -UACCUGaag----CGCG-----------AGauGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 39659 0.66 0.859723
Target:  5'- gGUGGuCUUCGCcCUCUgccGCGCggugCGCUUCu -3'
miRNA:   3'- -UACCuGAAGCGcGAGA---UGCG----GCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 40340 0.67 0.81972
Target:  5'- -cGGACg-CGCcaccgGCg--GCGCCGCCUCu -3'
miRNA:   3'- uaCCUGaaGCG-----CGagaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 41368 0.78 0.257644
Target:  5'- -cGGcCUUCGCGCUC-GCGgCGCCUCc -3'
miRNA:   3'- uaCCuGAAGCGCGAGaUGCgGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 46165 0.69 0.718709
Target:  5'- cUGGA--UCGCGCaCaGCGCCGCCg- -3'
miRNA:   3'- uACCUgaAGCGCGaGaUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 46194 0.67 0.784719
Target:  5'- --cGGCacCGCGCUCgcuCGCCGCCg- -3'
miRNA:   3'- uacCUGaaGCGCGAGau-GCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 47357 0.66 0.844273
Target:  5'- -cGGACgUUCGCGCUCaa-GCCgagGCCg- -3'
miRNA:   3'- uaCCUG-AAGCGCGAGaugCGG---CGGag -5'
10774 5' -58.1 NC_002794.1 + 50775 0.66 0.852094
Target:  5'- -gGcGACggCGCGuCUCggGCGgCGCCUCc -3'
miRNA:   3'- uaC-CUGaaGCGC-GAGa-UGCgGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 50839 0.66 0.852094
Target:  5'- -cGGGCgUCGCGaUCaACGCCGUCa- -3'
miRNA:   3'- uaCCUGaAGCGCgAGaUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 58309 0.66 0.844273
Target:  5'- -cGaGACcgcCGCGCUCUgcACGCCGCgcgugCUCg -3'
miRNA:   3'- uaC-CUGaa-GCGCGAGA--UGCGGCG-----GAG- -5'
10774 5' -58.1 NC_002794.1 + 61118 0.69 0.679222
Target:  5'- -gGGACcagcUCGUGCUCUGCG-CGCCc- -3'
miRNA:   3'- uaCCUGa---AGCGCGAGAUGCgGCGGag -5'
10774 5' -58.1 NC_002794.1 + 61862 0.66 0.836265
Target:  5'- cAUGGACgacgccgCGCGCcgUCgucgGCGCCGCg-- -3'
miRNA:   3'- -UACCUGaa-----GCGCG--AGa---UGCGGCGgag -5'
10774 5' -58.1 NC_002794.1 + 62496 0.72 0.520128
Target:  5'- aGUGGACggCGgGCg--GCGCCGCCg- -3'
miRNA:   3'- -UACCUGaaGCgCGagaUGCGGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.