miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 5' -58.1 NC_002794.1 + 64215 0.7 0.649184
Target:  5'- -cGGGCccaUCGaacuGCacCUGCGCCGCCUCg -3'
miRNA:   3'- uaCCUGa--AGCg---CGa-GAUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 66824 0.71 0.588956
Target:  5'- -aGGGCgcccggCGCGaCUCcggGCGCCGCCgUCg -3'
miRNA:   3'- uaCCUGaa----GCGC-GAGa--UGCGGCGG-AG- -5'
10774 5' -58.1 NC_002794.1 + 67209 0.68 0.74475
Target:  5'- -cGGGCggUGCGCUCgGCGCCgggcggcuaaccgcGUCUCg -3'
miRNA:   3'- uaCCUGaaGCGCGAGaUGCGG--------------CGGAG- -5'
10774 5' -58.1 NC_002794.1 + 72908 0.68 0.738058
Target:  5'- ---cACcgUCGCGCUCgcCGCCGCCgUCg -3'
miRNA:   3'- uaccUGa-AGCGCGAGauGCGGCGG-AG- -5'
10774 5' -58.1 NC_002794.1 + 85047 0.67 0.775617
Target:  5'- -cGGGCc-CGCGCUCgacgaccggccACGCCGCgUCu -3'
miRNA:   3'- uaCCUGaaGCGCGAGa----------UGCGGCGgAG- -5'
10774 5' -58.1 NC_002794.1 + 90086 0.67 0.775617
Target:  5'- gAUGuGGC-UCGgcaCGCUCUGCGCCGCg-- -3'
miRNA:   3'- -UAC-CUGaAGC---GCGAGAUGCGGCGgag -5'
10774 5' -58.1 NC_002794.1 + 91619 0.66 0.836265
Target:  5'- -aGGGCcaCGCcgacCUcCUGCGCCGCCUg -3'
miRNA:   3'- uaCCUGaaGCGc---GA-GAUGCGGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 92461 0.66 0.867154
Target:  5'- -cGGACUUcaugagCGCGCUCU-CGg-GCCUCa -3'
miRNA:   3'- uaCCUGAA------GCGCGAGAuGCggCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 92851 1.08 0.00249
Target:  5'- cAUGGACUUCGCGCUCUACGCCGCCUCg -3'
miRNA:   3'- -UACCUGAAGCGCGAGAUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 93050 0.67 0.784719
Target:  5'- cUGGcCUUCcUGCUCUACGCCuuccacgagcGCCUg -3'
miRNA:   3'- uACCuGAAGcGCGAGAUGCGG----------CGGAg -5'
10774 5' -58.1 NC_002794.1 + 93745 0.66 0.844273
Target:  5'- -cGaGAC--CGUGCUCUucgACGCCGaCCUCu -3'
miRNA:   3'- uaC-CUGaaGCGCGAGA---UGCGGC-GGAG- -5'
10774 5' -58.1 NC_002794.1 + 93971 0.67 0.811197
Target:  5'- -aGGACUUuucccugacCGCGCUCgGCGCggaCGCCg- -3'
miRNA:   3'- uaCCUGAA---------GCGCGAGaUGCG---GCGGag -5'
10774 5' -58.1 NC_002794.1 + 94983 0.66 0.859723
Target:  5'- -gGGGCUgga-GCUCUGuCGCCGCUUg -3'
miRNA:   3'- uaCCUGAagcgCGAGAU-GCGGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 95570 0.69 0.699074
Target:  5'- -aGGACga-GCgGCUCUAUGUCGgCUCg -3'
miRNA:   3'- uaCCUGaagCG-CGAGAUGCGGCgGAG- -5'
10774 5' -58.1 NC_002794.1 + 96391 0.66 0.859723
Target:  5'- aGUGGAUggUCGCGC-CUuacCGgCGCUUCu -3'
miRNA:   3'- -UACCUGa-AGCGCGaGAu--GCgGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 98955 0.69 0.689171
Target:  5'- -gGGGC-UCGUGCUggGCGCCGUCg- -3'
miRNA:   3'- uaCCUGaAGCGCGAgaUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 99592 0.79 0.216019
Target:  5'- -aGGGCgcggcggcggcgCGCGCUC-GCGCCGCCUCg -3'
miRNA:   3'- uaCCUGaa----------GCGCGAGaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 105938 0.68 0.75705
Target:  5'- -cGGGCUggaCGCGCUgUACgaacggcuggggGCCGCCg- -3'
miRNA:   3'- uaCCUGAa--GCGCGAgAUG------------CGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 106263 0.7 0.639135
Target:  5'- -cGGcgaGCgcCGCGCgucGCGCCGCCUCg -3'
miRNA:   3'- uaCC---UGaaGCGCGagaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 107414 0.66 0.844273
Target:  5'- -gGcGGCUaugUCcuGgGCUCUGCGgCGCCUCg -3'
miRNA:   3'- uaC-CUGA---AG--CgCGAGAUGCgGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.