miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 5' -58.1 NC_002794.1 + 194247 0.72 0.539522
Target:  5'- cGUGGuCcgCGaacaGCUCgcccgACGCCGCCUCg -3'
miRNA:   3'- -UACCuGaaGCg---CGAGa----UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 193376 0.68 0.766392
Target:  5'- -cGGGC--CGCGCUCcucgccguCGuCCGCCUCg -3'
miRNA:   3'- uaCCUGaaGCGCGAGau------GC-GGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 192634 0.66 0.859723
Target:  5'- -cGGGCggC-CGCUCcagccGCGCCGCCg- -3'
miRNA:   3'- uaCCUGaaGcGCGAGa----UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 192294 0.72 0.520128
Target:  5'- -cGGagaccaGCUUCGCGCUCguccgcgcuCGCCGCCg- -3'
miRNA:   3'- uaCC------UGAAGCGCGAGau-------GCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 190657 0.69 0.699074
Target:  5'- -aGGAUcacgUCGCGCcCgccGCGCCGCCg- -3'
miRNA:   3'- uaCCUGa---AGCGCGaGa--UGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 184514 0.66 0.836265
Target:  5'- -cGGGCcccgCGCGCggcgCgggcgACGCCGCC-Ca -3'
miRNA:   3'- uaCCUGaa--GCGCGa---Ga----UGCGGCGGaG- -5'
10774 5' -58.1 NC_002794.1 + 152342 0.7 0.62908
Target:  5'- -cGGuCcaCGCGCUCUACGgCCGCUUg -3'
miRNA:   3'- uaCCuGaaGCGCGAGAUGC-GGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 149675 0.72 0.489694
Target:  5'- -gGGGCgcgUCGCGCUCgacuggccgcggGgGCCGCCUg -3'
miRNA:   3'- uaCCUGa--AGCGCGAGa-----------UgCGGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 148518 0.66 0.844273
Target:  5'- cUGGAa---GCGg-CUGCGCCGCUUCc -3'
miRNA:   3'- uACCUgaagCGCgaGAUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 148058 0.66 0.86642
Target:  5'- --cGGCUcCGCGCUCUGggaGCCgggagugGCCUCg -3'
miRNA:   3'- uacCUGAaGCGCGAGAUg--CGG-------CGGAG- -5'
10774 5' -58.1 NC_002794.1 + 146967 0.7 0.65922
Target:  5'- cAUGGACcgccugUCGCGaggUCgGCGCCGCCg- -3'
miRNA:   3'- -UACCUGa-----AGCGCg--AGaUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 138715 0.66 0.859723
Target:  5'- cGUGGAC-UCGCG-UCga-GCCGgCUCg -3'
miRNA:   3'- -UACCUGaAGCGCgAGaugCGGCgGAG- -5'
10774 5' -58.1 NC_002794.1 + 134950 0.66 0.836265
Target:  5'- uAUGuGGCgaagcCGCGCgaccccugCUuccACGCCGCCUCc -3'
miRNA:   3'- -UAC-CUGaa---GCGCGa-------GA---UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 134762 0.67 0.811197
Target:  5'- -cGGACgUCGCGCccaUACGCgaCGuCCUCg -3'
miRNA:   3'- uaCCUGaAGCGCGag-AUGCG--GC-GGAG- -5'
10774 5' -58.1 NC_002794.1 + 134469 0.69 0.708923
Target:  5'- -gGGACg--GCGCUCU-CGUCGCCa- -3'
miRNA:   3'- uaCCUGaagCGCGAGAuGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 126116 0.7 0.607981
Target:  5'- cUGGGCgcCGCGCucgUCUGCGCCGguuucuggccggcCCUCu -3'
miRNA:   3'- uACCUGaaGCGCG---AGAUGCGGC-------------GGAG- -5'
10774 5' -58.1 NC_002794.1 + 116867 0.71 0.550294
Target:  5'- -cGGcCgugUCGCGCUCgucaggggggcgccgGCGCCGUCUCc -3'
miRNA:   3'- uaCCuGa--AGCGCGAGa--------------UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 115919 0.66 0.851321
Target:  5'- gGUGGACUUgGCGCggcgGCGggccggcCCGCCg- -3'
miRNA:   3'- -UACCUGAAgCGCGaga-UGC-------GGCGGag -5'
10774 5' -58.1 NC_002794.1 + 113412 0.66 0.852094
Target:  5'- -cGGAgCUgguccagcacgUCgGCGUUCUgccGCGCCGUCUCg -3'
miRNA:   3'- uaCCU-GA-----------AG-CGCGAGA---UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 111733 0.69 0.718709
Target:  5'- -cGGGCgaaCGCGCUCgucgagcugGCGCCGCg-- -3'
miRNA:   3'- uaCCUGaa-GCGCGAGa--------UGCGGCGgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.