miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10774 5' -58.1 NC_002794.1 + 94983 0.66 0.859723
Target:  5'- -gGGGCUgga-GCUCUGuCGCCGCUUg -3'
miRNA:   3'- uaCCUGAagcgCGAGAU-GCGGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 96391 0.66 0.859723
Target:  5'- aGUGGAUggUCGCGC-CUuacCGgCGCUUCu -3'
miRNA:   3'- -UACCUGa-AGCGCGaGAu--GCgGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 92461 0.66 0.867154
Target:  5'- -cGGACUUcaugagCGCGCUCU-CGg-GCCUCa -3'
miRNA:   3'- uaCCUGAA------GCGCGAGAuGCggCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 15353 0.66 0.867154
Target:  5'- gAUGGAa-UCGCacGCUCU-CGaCCGCCUg -3'
miRNA:   3'- -UACCUgaAGCG--CGAGAuGC-GGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 148058 0.66 0.86642
Target:  5'- --cGGCUcCGCGCUCUGggaGCCgggagugGCCUCg -3'
miRNA:   3'- uacCUGAaGCGCGAGAUg--CGG-------CGGAG- -5'
10774 5' -58.1 NC_002794.1 + 148518 0.66 0.844273
Target:  5'- cUGGAa---GCGg-CUGCGCCGCUUCc -3'
miRNA:   3'- uACCUgaagCGCgaGAUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 58309 0.66 0.844273
Target:  5'- -cGaGACcgcCGCGCUCUgcACGCCGCgcgugCUCg -3'
miRNA:   3'- uaC-CUGaa-GCGCGAGA--UGCGGCG-----GAG- -5'
10774 5' -58.1 NC_002794.1 + 14921 0.67 0.807743
Target:  5'- -cGGGCUcgcggucccgaCGUGCUCUcgaucggcucgccCGCCGCCUCg -3'
miRNA:   3'- uaCCUGAa----------GCGCGAGAu------------GCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 93971 0.67 0.811197
Target:  5'- -aGGACUUuucccugacCGCGCUCgGCGCggaCGCCg- -3'
miRNA:   3'- uaCCUGAA---------GCGCGAGaUGCG---GCGGag -5'
10774 5' -58.1 NC_002794.1 + 38483 0.66 0.828079
Target:  5'- uAUGGGCggaggaaGCGCggcggcgccggUCgcCGCCGCCUCc -3'
miRNA:   3'- -UACCUGaag----CGCG-----------AGauGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 40340 0.67 0.81972
Target:  5'- -cGGACg-CGCcaccgGCg--GCGCCGCCUCu -3'
miRNA:   3'- uaCCUGaaGCG-----CGagaUGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 134762 0.67 0.811197
Target:  5'- -cGGACgUCGCGCccaUACGCgaCGuCCUCg -3'
miRNA:   3'- uaCCUGaAGCGCGag-AUGCG--GC-GGAG- -5'
10774 5' -58.1 NC_002794.1 + 12416 0.66 0.834642
Target:  5'- -cGGACggCGCGCgccgacuggcagCUgucccgcgucaGCGcCCGCCUCa -3'
miRNA:   3'- uaCCUGaaGCGCGa-----------GA-----------UGC-GGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 134950 0.66 0.836265
Target:  5'- uAUGuGGCgaagcCGCGCgaccccugCUuccACGCCGCCUCc -3'
miRNA:   3'- -UAC-CUGaa---GCGCGa-------GA---UGCGGCGGAG- -5'
10774 5' -58.1 NC_002794.1 + 34462 0.66 0.836265
Target:  5'- -aGGACgaguaccUGCGCaccuucaagCUGCGCCGCCa- -3'
miRNA:   3'- uaCCUGaa-----GCGCGa--------GAUGCGGCGGag -5'
10774 5' -58.1 NC_002794.1 + 184514 0.66 0.836265
Target:  5'- -cGGGCcccgCGCGCggcgCgggcgACGCCGCC-Ca -3'
miRNA:   3'- uaCCUGaa--GCGCGa---Ga----UGCGGCGGaG- -5'
10774 5' -58.1 NC_002794.1 + 61862 0.66 0.836265
Target:  5'- cAUGGACgacgccgCGCGCcgUCgucgGCGCCGCg-- -3'
miRNA:   3'- -UACCUGaa-----GCGCG--AGa---UGCGGCGgag -5'
10774 5' -58.1 NC_002794.1 + 91619 0.66 0.836265
Target:  5'- -aGGGCcaCGCcgacCUcCUGCGCCGCCUg -3'
miRNA:   3'- uaCCUGaaGCGc---GA-GAUGCGGCGGAg -5'
10774 5' -58.1 NC_002794.1 + 93745 0.66 0.844273
Target:  5'- -cGaGAC--CGUGCUCUucgACGCCGaCCUCu -3'
miRNA:   3'- uaC-CUGaaGCGCGAGA---UGCGGC-GGAG- -5'
10774 5' -58.1 NC_002794.1 + 107414 0.66 0.844273
Target:  5'- -gGcGGCUaugUCcuGgGCUCUGCGgCGCCUCg -3'
miRNA:   3'- uaC-CUGA---AG--CgCGAGAUGCgGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.