miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10775 3' -60.8 NC_002794.1 + 116733 0.66 0.736649
Target:  5'- cCGAGCgUGUUG-GCgacgccgccgaggaaGGCgGCUGCAGg -3'
miRNA:   3'- -GCUCGgACGACgCGa--------------CCGaCGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 192073 0.66 0.735699
Target:  5'- --uGCugCUGCUGCuGCUGcuGCUGCUGCu- -3'
miRNA:   3'- gcuCG--GACGACG-CGAC--CGACGACGuc -5'
10775 3' -60.8 NC_002794.1 + 192100 0.66 0.735699
Target:  5'- --uGCugCUGCUGCuGCUGcuGCUGCUGCu- -3'
miRNA:   3'- gcuCG--GACGACG-CGAC--CGACGACGuc -5'
10775 3' -60.8 NC_002794.1 + 113942 0.66 0.716516
Target:  5'- aCGGGCC-GCUGC-CgGGCUucCUGCAGc -3'
miRNA:   3'- -GCUCGGaCGACGcGaCCGAc-GACGUC- -5'
10775 3' -60.8 NC_002794.1 + 59361 0.66 0.716516
Target:  5'- --cGgCUGCUGCGCcaccacGGCgccgcgccUGCUGCGGg -3'
miRNA:   3'- gcuCgGACGACGCGa-----CCG--------ACGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 124623 0.66 0.716516
Target:  5'- uGAGCuucCUGCcgGCGCccgccaUGG-UGCUGCAGa -3'
miRNA:   3'- gCUCG---GACGa-CGCG------ACCgACGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 112834 0.66 0.697061
Target:  5'- cCGAGUacggCUGCUcgucgGCGCgccgcagcaGCUGCUGCAGc -3'
miRNA:   3'- -GCUCG----GACGA-----CGCGac-------CGACGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 58976 0.66 0.697061
Target:  5'- cCGAgcGCCUGCgcgacGacgaGCUGGC-GCUGCAc -3'
miRNA:   3'- -GCU--CGGACGa----Cg---CGACCGaCGACGUc -5'
10775 3' -60.8 NC_002794.1 + 130457 0.66 0.687253
Target:  5'- uGGGCg-GCgagGCGCUGGCgGCUuGCGu -3'
miRNA:   3'- gCUCGgaCGa--CGCGACCGaCGA-CGUc -5'
10775 3' -60.8 NC_002794.1 + 150224 0.67 0.677401
Target:  5'- cCGAGCUgcgUGCgacgGCaGCUGGaagcGCUGCGGc -3'
miRNA:   3'- -GCUCGG---ACGa---CG-CGACCga--CGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 39541 0.67 0.667514
Target:  5'- uGGGgCUGCUGUGC-GGCcuCUGCGGc -3'
miRNA:   3'- gCUCgGACGACGCGaCCGacGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 113380 0.67 0.667514
Target:  5'- gCGGGCCgccGUcGUGCaGGC-GCUGCAGc -3'
miRNA:   3'- -GCUCGGa--CGaCGCGaCCGaCGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 118718 0.68 0.60789
Target:  5'- -uGGCCaGCUGCGCguacugGGC-GCUGCu- -3'
miRNA:   3'- gcUCGGaCGACGCGa-----CCGaCGACGuc -5'
10775 3' -60.8 NC_002794.1 + 138990 0.68 0.588077
Target:  5'- gCGGGCCUGC-GCGaaGGCU-UUGCGGc -3'
miRNA:   3'- -GCUCGGACGaCGCgaCCGAcGACGUC- -5'
10775 3' -60.8 NC_002794.1 + 104889 0.68 0.578212
Target:  5'- gCGGGCCggccGCgagGCGCcGuGCUGCUcgaGCAGg -3'
miRNA:   3'- -GCUCGGa---CGa--CGCGaC-CGACGA---CGUC- -5'
10775 3' -60.8 NC_002794.1 + 81520 0.68 0.578212
Target:  5'- cCGAGCCUacugcgacacgcGCUcgaGCGCUGGacgGCUGCc- -3'
miRNA:   3'- -GCUCGGA------------CGA---CGCGACCga-CGACGuc -5'
10775 3' -60.8 NC_002794.1 + 192044 0.69 0.510496
Target:  5'- gCGGcGgCUGCUGCuGCUGcuGCUGCUGCu- -3'
miRNA:   3'- -GCU-CgGACGACG-CGAC--CGACGACGuc -5'
10775 3' -60.8 NC_002794.1 + 125817 0.7 0.501076
Target:  5'- cCGGGCuCUGCguccucgGCGCccuGCUGCUGCGc -3'
miRNA:   3'- -GCUCG-GACGa------CGCGac-CGACGACGUc -5'
10775 3' -60.8 NC_002794.1 + 126285 0.7 0.501076
Target:  5'- uGGGCUUGCUGUGCgccgcgcgccUGGCggUGCaGCGGa -3'
miRNA:   3'- gCUCGGACGACGCG----------ACCG--ACGaCGUC- -5'
10775 3' -60.8 NC_002794.1 + 57319 0.7 0.464207
Target:  5'- cCGAGuaCCUGCaGCGCgucCUGCUGCAGc -3'
miRNA:   3'- -GCUC--GGACGaCGCGaccGACGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.