miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10775 5' -58.3 NC_002794.1 + 34276 0.66 0.846264
Target:  5'- ---cGCaGGCgGCCagCGCCAGCGAC-Cg -3'
miRNA:   3'- uagaCG-CCG-CGGaaGCGGUCGUUGaG- -5'
10775 5' -58.3 NC_002794.1 + 108199 0.66 0.846264
Target:  5'- ---aGCGGCGCUgcgccgccgCGCCGGC--CUCg -3'
miRNA:   3'- uagaCGCCGCGGaa-------GCGGUCGuuGAG- -5'
10775 5' -58.3 NC_002794.1 + 189135 0.66 0.846264
Target:  5'- --gUGCGGgGCCgccagCGCCAGacuCUCc -3'
miRNA:   3'- uagACGCCgCGGaa---GCGGUCguuGAG- -5'
10775 5' -58.3 NC_002794.1 + 122022 0.66 0.838246
Target:  5'- uUCUuCGGCGCCgggCGUCucguGCAGCaUCa -3'
miRNA:   3'- uAGAcGCCGCGGaa-GCGGu---CGUUG-AG- -5'
10775 5' -58.3 NC_002794.1 + 13342 0.66 0.830044
Target:  5'- gGUCgggggugGCGGCGCCccUCGCCcgGGCc-CUCc -3'
miRNA:   3'- -UAGa------CGCCGCGGa-AGCGG--UCGuuGAG- -5'
10775 5' -58.3 NC_002794.1 + 55305 0.66 0.830044
Target:  5'- ---gGCGGCGUCgcggcgggCGCgGGCGGCUUc -3'
miRNA:   3'- uagaCGCCGCGGaa------GCGgUCGUUGAG- -5'
10775 5' -58.3 NC_002794.1 + 14652 0.66 0.830044
Target:  5'- ---cGcCGGCGCCgcggCGUCGGUccGACUCg -3'
miRNA:   3'- uagaC-GCCGCGGaa--GCGGUCG--UUGAG- -5'
10775 5' -58.3 NC_002794.1 + 145741 0.66 0.830044
Target:  5'- ---gGCGGCGCCggcaUCGaCGGCGACc- -3'
miRNA:   3'- uagaCGCCGCGGa---AGCgGUCGUUGag -5'
10775 5' -58.3 NC_002794.1 + 141573 0.66 0.825038
Target:  5'- ---cGCGGCcuccgugaucaugacGCCcgcgUCGCCGgGCGGCUCg -3'
miRNA:   3'- uagaCGCCG---------------CGGa---AGCGGU-CGUUGAG- -5'
10775 5' -58.3 NC_002794.1 + 48921 0.66 0.821666
Target:  5'- cUCcGCaGCGCCagCGCCAGgcGCUCg -3'
miRNA:   3'- uAGaCGcCGCGGaaGCGGUCguUGAG- -5'
10775 5' -58.3 NC_002794.1 + 46324 0.66 0.821666
Target:  5'- ---cGaCGGCGCCgUCGCCgcGGaCGGCUCc -3'
miRNA:   3'- uagaC-GCCGCGGaAGCGG--UC-GUUGAG- -5'
10775 5' -58.3 NC_002794.1 + 114152 0.66 0.821666
Target:  5'- ---cGCaGGCGCCg-CGUCAGCcGCUCc -3'
miRNA:   3'- uagaCG-CCGCGGaaGCGGUCGuUGAG- -5'
10775 5' -58.3 NC_002794.1 + 58864 0.66 0.821666
Target:  5'- cGUCgccgacCGGCaGCCgugcgCGCCGcGCAGCUCg -3'
miRNA:   3'- -UAGac----GCCG-CGGaa---GCGGU-CGUUGAG- -5'
10775 5' -58.3 NC_002794.1 + 67205 0.66 0.821666
Target:  5'- cGUCcggGCGGUGCgCUcggCGCCGgGCGGCUa -3'
miRNA:   3'- -UAGa--CGCCGCG-GAa--GCGGU-CGUUGAg -5'
10775 5' -58.3 NC_002794.1 + 124388 0.66 0.813119
Target:  5'- gGUCgcgGCGGCGCg-UCGCCGGUcg-UCg -3'
miRNA:   3'- -UAGa--CGCCGCGgaAGCGGUCGuugAG- -5'
10775 5' -58.3 NC_002794.1 + 49829 0.66 0.813119
Target:  5'- cGUCUGauaggcgaGGCGCCgccauuccgCGUCGGCGGCg- -3'
miRNA:   3'- -UAGACg-------CCGCGGaa-------GCGGUCGUUGag -5'
10775 5' -58.3 NC_002794.1 + 82058 0.66 0.813119
Target:  5'- ---gGCGGCGUCguccucggccUCGCCGGCccuCUCg -3'
miRNA:   3'- uagaCGCCGCGGa---------AGCGGUCGuu-GAG- -5'
10775 5' -58.3 NC_002794.1 + 114742 0.66 0.804411
Target:  5'- cGUCgagcCGGCGCCgccCGCCGGCGccggucCUCg -3'
miRNA:   3'- -UAGac--GCCGCGGaa-GCGGUCGUu-----GAG- -5'
10775 5' -58.3 NC_002794.1 + 117453 0.66 0.804411
Target:  5'- uGUC-GCGGaagaCGCCgcggUCGUCGGCGuACUCg -3'
miRNA:   3'- -UAGaCGCC----GCGGa---AGCGGUCGU-UGAG- -5'
10775 5' -58.3 NC_002794.1 + 48875 0.66 0.804411
Target:  5'- cGUCgGCGGCcagguggcagGCCagcgUUGCC-GCAGCUCg -3'
miRNA:   3'- -UAGaCGCCG----------CGGa---AGCGGuCGUUGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.