miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 53347 0.66 0.999861
Target:  5'- uCCGGCgccCAcGUcaAC-UCcGCCGGGUCCc -3'
miRNA:   3'- -GGCCGa--GUuCA--UGaAGuUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 141619 0.66 0.999861
Target:  5'- aCCGGCUCGcGGU-CUagCGACgGGAaggCCg -3'
miRNA:   3'- -GGCCGAGU-UCAuGAa-GUUGgUCUa--GG- -5'
10776 3' -48.7 NC_002794.1 + 180749 0.66 0.999861
Target:  5'- uCCGGCUCcucGGcgGCUUCGGCgGcaacuGUCCg -3'
miRNA:   3'- -GGCCGAGu--UCa-UGAAGUUGgUc----UAGG- -5'
10776 3' -48.7 NC_002794.1 + 149002 0.66 0.999822
Target:  5'- gUCGGaUCGAcUGUUUCAACCGGGUCa -3'
miRNA:   3'- -GGCCgAGUUcAUGAAGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 190703 0.66 0.999822
Target:  5'- cCCGGCgcagcgUCGGGUuCUcCAGCCGGAg-- -3'
miRNA:   3'- -GGCCG------AGUUCAuGAaGUUGGUCUagg -5'
10776 3' -48.7 NC_002794.1 + 78686 0.66 0.999822
Target:  5'- gCCGGCcgCAuGUGCggcCGACaCGGcgCCg -3'
miRNA:   3'- -GGCCGa-GUuCAUGaa-GUUG-GUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 107329 0.66 0.999822
Target:  5'- gCGGUUCG---GCUUCGGuCCguGGGUCCg -3'
miRNA:   3'- gGCCGAGUucaUGAAGUU-GG--UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 48306 0.66 0.999773
Target:  5'- -aGGCUCGAGUccaccgGCUUCGugCAcacGGcCCg -3'
miRNA:   3'- ggCCGAGUUCA------UGAAGUugGU---CUaGG- -5'
10776 3' -48.7 NC_002794.1 + 16355 0.66 0.999773
Target:  5'- gUCGGCgccacccgCAcccgcGUGCacggCGGCCGGGUCCg -3'
miRNA:   3'- -GGCCGa-------GUu----CAUGaa--GUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 165913 0.66 0.999773
Target:  5'- uCUGGUUCGGGUAUcUCGcACCGu-UCCa -3'
miRNA:   3'- -GGCCGAGUUCAUGaAGU-UGGUcuAGG- -5'
10776 3' -48.7 NC_002794.1 + 14718 0.66 0.999773
Target:  5'- gCuGCUCGcg-GCUUCGGCUcgGGGUCCg -3'
miRNA:   3'- gGcCGAGUucaUGAAGUUGG--UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 122677 0.66 0.999712
Target:  5'- cCCGGCU---GUGCcggUCGcGCCAGcgCCg -3'
miRNA:   3'- -GGCCGAguuCAUGa--AGU-UGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 69141 0.66 0.999712
Target:  5'- gCCGGC-CAAGccGCUUCGcCCAcGUUCa -3'
miRNA:   3'- -GGCCGaGUUCa-UGAAGUuGGUcUAGG- -5'
10776 3' -48.7 NC_002794.1 + 42128 0.66 0.999691
Target:  5'- uUCGGCgaCGAGUACUUgAgcgucuugccgaGCCAGAcggagaacgucucgUCCg -3'
miRNA:   3'- -GGCCGa-GUUCAUGAAgU------------UGGUCU--------------AGG- -5'
10776 3' -48.7 NC_002794.1 + 187041 0.66 0.999638
Target:  5'- aCCGGCUCGcAGUcccggagcccGCggcCcGCCAGGUgCCg -3'
miRNA:   3'- -GGCCGAGU-UCA----------UGaa-GuUGGUCUA-GG- -5'
10776 3' -48.7 NC_002794.1 + 151961 0.66 0.999638
Target:  5'- aCGGCccCGGGUGCUccUCGGCCcgggacguGGUCUa -3'
miRNA:   3'- gGCCGa-GUUCAUGA--AGUUGGu-------CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 130875 0.66 0.999638
Target:  5'- gCGGgUCAGGUGga-CGAUCuGAUCCa -3'
miRNA:   3'- gGCCgAGUUCAUgaaGUUGGuCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 160622 0.66 0.999638
Target:  5'- aUCGGCUCGGG-ACaau-ACCGGAUUa -3'
miRNA:   3'- -GGCCGAGUUCaUGaaguUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 31679 0.67 0.999548
Target:  5'- cUCGGCgugCGAG-AUgaaCAGCCGGGUCa -3'
miRNA:   3'- -GGCCGa--GUUCaUGaa-GUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 35007 0.67 0.999548
Target:  5'- cCCGGCaCuauGUACagCAACCGccuccuGAUCCg -3'
miRNA:   3'- -GGCCGaGuu-CAUGaaGUUGGU------CUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.