Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10776 | 3' | -48.7 | NC_002794.1 | + | 92362 | 1.16 | 0.0082 |
Target: 5'- aCCGGCUCAAGUACUUCAACCAGAUCCu -3' miRNA: 3'- -GGCCGAGUUCAUGAAGUUGGUCUAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 103733 | 0.93 | 0.177033 |
Target: 5'- -aGGCUCAGGUACUUCugcuCCAGGUCCg -3' miRNA: 3'- ggCCGAGUUCAUGAAGuu--GGUCUAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 67510 | 0.81 | 0.649085 |
Target: 5'- aUCGuGCUgAGGUACUcgaCGACCGGAUCCg -3' miRNA: 3'- -GGC-CGAgUUCAUGAa--GUUGGUCUAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 20345 | 0.78 | 0.784395 |
Target: 5'- uCCGGCUCAGccGCUUCGagcuggaccaccugcGCCGGAUCg -3' miRNA: 3'- -GGCCGAGUUcaUGAAGU---------------UGGUCUAGg -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 60870 | 0.77 | 0.834675 |
Target: 5'- gCCGGCucUCAAGUACaUCGgcGCCGuGGUCCc -3' miRNA: 3'- -GGCCG--AGUUCAUGaAGU--UGGU-CUAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 155909 | 0.76 | 0.866974 |
Target: 5'- aCCGGCUCGAcGUGCgg-AGCCGGGUgCu -3' miRNA: 3'- -GGCCGAGUU-CAUGaagUUGGUCUAgG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 73750 | 0.76 | 0.866974 |
Target: 5'- cCCGGCUCGAacgcGU-CUUCGAggaacuggcgcuCCAGGUCCu -3' miRNA: 3'- -GGCCGAGUU----CAuGAAGUU------------GGUCUAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 86255 | 0.75 | 0.895736 |
Target: 5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3' miRNA: 3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 107885 | 0.75 | 0.908686 |
Target: 5'- gCGGCgcggCGGGUGCggCuGCCGGGUCUg -3' miRNA: 3'- gGCCGa---GUUCAUGaaGuUGGUCUAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 86615 | 0.75 | 0.895736 |
Target: 5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3' miRNA: 3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 86447 | 0.75 | 0.895736 |
Target: 5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3' miRNA: 3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 182949 | 0.74 | 0.946173 |
Target: 5'- gCCgGGCUCGAGccgACggCGGCCGGcUCCu -3' miRNA: 3'- -GG-CCGAGUUCa--UGaaGUUGGUCuAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 188086 | 0.74 | 0.926254 |
Target: 5'- uUCGGC-CAAGUACUgcUCGGCUaacuGGAUCUg -3' miRNA: 3'- -GGCCGaGUUCAUGA--AGUUGG----UCUAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 37968 | 0.74 | 0.939655 |
Target: 5'- gCGGCUCGuGGUACgagccgaucgcggUCAGCCGGG-CCa -3' miRNA: 3'- gGCCGAGU-UCAUGa------------AGUUGGUCUaGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 21512 | 0.74 | 0.931608 |
Target: 5'- uCCGGCUCGAGgacggGCggaucgggaUCGGCUAGcUCCg -3' miRNA: 3'- -GGCCGAGUUCa----UGa--------AGUUGGUCuAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 143012 | 0.74 | 0.941567 |
Target: 5'- cCCGG-UCAGcGUGCggUCGGCCGGGUCg -3' miRNA: 3'- -GGCCgAGUU-CAUGa-AGUUGGUCUAGg -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 137028 | 0.74 | 0.936712 |
Target: 5'- -aGGUUCAGGUGCUcgUCGAUCGGgAUCUc -3' miRNA: 3'- ggCCGAGUUCAUGA--AGUUGGUC-UAGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 151242 | 0.73 | 0.962178 |
Target: 5'- aCCGGCUCAccgucGUGCUcuUCAACgAGcgCUg -3' miRNA: 3'- -GGCCGAGUu----CAUGA--AGUUGgUCuaGG- -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 116803 | 0.73 | 0.962178 |
Target: 5'- gCCGGCUCGGGcGCcgUAGCgCGGGUCg -3' miRNA: 3'- -GGCCGAGUUCaUGaaGUUG-GUCUAGg -5' |
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10776 | 3' | -48.7 | NC_002794.1 | + | 129750 | 0.73 | 0.950534 |
Target: 5'- gCCGcGUUCuGGUACUUCGgauACCgguGGAUCCu -3' miRNA: 3'- -GGC-CGAGuUCAUGAAGU---UGG---UCUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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