miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 92362 1.16 0.0082
Target:  5'- aCCGGCUCAAGUACUUCAACCAGAUCCu -3'
miRNA:   3'- -GGCCGAGUUCAUGAAGUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 103733 0.93 0.177033
Target:  5'- -aGGCUCAGGUACUUCugcuCCAGGUCCg -3'
miRNA:   3'- ggCCGAGUUCAUGAAGuu--GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 67510 0.81 0.649085
Target:  5'- aUCGuGCUgAGGUACUcgaCGACCGGAUCCg -3'
miRNA:   3'- -GGC-CGAgUUCAUGAa--GUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 20345 0.78 0.784395
Target:  5'- uCCGGCUCAGccGCUUCGagcuggaccaccugcGCCGGAUCg -3'
miRNA:   3'- -GGCCGAGUUcaUGAAGU---------------UGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 60870 0.77 0.834675
Target:  5'- gCCGGCucUCAAGUACaUCGgcGCCGuGGUCCc -3'
miRNA:   3'- -GGCCG--AGUUCAUGaAGU--UGGU-CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 155909 0.76 0.866974
Target:  5'- aCCGGCUCGAcGUGCgg-AGCCGGGUgCu -3'
miRNA:   3'- -GGCCGAGUU-CAUGaagUUGGUCUAgG- -5'
10776 3' -48.7 NC_002794.1 + 73750 0.76 0.866974
Target:  5'- cCCGGCUCGAacgcGU-CUUCGAggaacuggcgcuCCAGGUCCu -3'
miRNA:   3'- -GGCCGAGUU----CAuGAAGUU------------GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 86255 0.75 0.895736
Target:  5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3'
miRNA:   3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5'
10776 3' -48.7 NC_002794.1 + 86615 0.75 0.895736
Target:  5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3'
miRNA:   3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5'
10776 3' -48.7 NC_002794.1 + 86447 0.75 0.895736
Target:  5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3'
miRNA:   3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5'
10776 3' -48.7 NC_002794.1 + 107885 0.75 0.908686
Target:  5'- gCGGCgcggCGGGUGCggCuGCCGGGUCUg -3'
miRNA:   3'- gGCCGa---GUUCAUGaaGuUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 188086 0.74 0.926254
Target:  5'- uUCGGC-CAAGUACUgcUCGGCUaacuGGAUCUg -3'
miRNA:   3'- -GGCCGaGUUCAUGA--AGUUGG----UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 21512 0.74 0.931608
Target:  5'- uCCGGCUCGAGgacggGCggaucgggaUCGGCUAGcUCCg -3'
miRNA:   3'- -GGCCGAGUUCa----UGa--------AGUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 137028 0.74 0.936712
Target:  5'- -aGGUUCAGGUGCUcgUCGAUCGGgAUCUc -3'
miRNA:   3'- ggCCGAGUUCAUGA--AGUUGGUC-UAGG- -5'
10776 3' -48.7 NC_002794.1 + 37968 0.74 0.939655
Target:  5'- gCGGCUCGuGGUACgagccgaucgcggUCAGCCGGG-CCa -3'
miRNA:   3'- gGCCGAGU-UCAUGa------------AGUUGGUCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 143012 0.74 0.941567
Target:  5'- cCCGG-UCAGcGUGCggUCGGCCGGGUCg -3'
miRNA:   3'- -GGCCgAGUU-CAUGa-AGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 182949 0.74 0.946173
Target:  5'- gCCgGGCUCGAGccgACggCGGCCGGcUCCu -3'
miRNA:   3'- -GG-CCGAGUUCa--UGaaGUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 92562 0.73 0.950534
Target:  5'- gCCGGCgccacgCAGGc-CUUCAACCuGGAUCUg -3'
miRNA:   3'- -GGCCGa-----GUUCauGAAGUUGG-UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 129750 0.73 0.950534
Target:  5'- gCCGcGUUCuGGUACUUCGgauACCgguGGAUCCu -3'
miRNA:   3'- -GGC-CGAGuUCAUGAAGU---UGG---UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 20309 0.73 0.958532
Target:  5'- uCUGGCUCGAGauggacCUUCG-CUGGGUCCg -3'
miRNA:   3'- -GGCCGAGUUCau----GAAGUuGGUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.