miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 116803 0.73 0.962178
Target:  5'- gCCGGCUCGGGcGCcgUAGCgCGGGUCg -3'
miRNA:   3'- -GGCCGAGUUCaUGaaGUUG-GUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 151242 0.73 0.962178
Target:  5'- aCCGGCUCAccgucGUGCUcuUCAACgAGcgCUg -3'
miRNA:   3'- -GGCCGAGUu----CAUGA--AGUUGgUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 52965 0.73 0.965595
Target:  5'- cUCGGC-CAGGUGC-UCGGCCucGUCCu -3'
miRNA:   3'- -GGCCGaGUUCAUGaAGUUGGucUAGG- -5'
10776 3' -48.7 NC_002794.1 + 188043 0.72 0.971766
Target:  5'- cCCGGaCgcggCGAGUcucgACUUCGGCCAGcgUCa -3'
miRNA:   3'- -GGCC-Ga---GUUCA----UGAAGUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 122501 0.72 0.974533
Target:  5'- gUCGGCgccgCAGGaggGCUUCuccGGCCGGAUCg -3'
miRNA:   3'- -GGCCGa---GUUCa--UGAAG---UUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 73192 0.72 0.977097
Target:  5'- uCCGGUUCcaacGGUACUUC-AUCAGcUCCc -3'
miRNA:   3'- -GGCCGAGu---UCAUGAAGuUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 131831 0.72 0.977097
Target:  5'- aCGGuCUCGcgcgucGGUGCUaaguUCGcACCGGAUCCc -3'
miRNA:   3'- gGCC-GAGU------UCAUGA----AGU-UGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 178644 0.71 0.983652
Target:  5'- aCCGGCUUucuGGUcgGCggUCcuCCAGAUCUa -3'
miRNA:   3'- -GGCCGAGu--UCA--UGa-AGuuGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 81408 0.71 0.985485
Target:  5'- cCCGGCUCGGGaGCUgcUCGcCCGGcUUCg -3'
miRNA:   3'- -GGCCGAGUUCaUGA--AGUuGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 101923 0.71 0.985485
Target:  5'- aCgGGUUCAcGgGCUUCAGCCAGggCa -3'
miRNA:   3'- -GgCCGAGUuCaUGAAGUUGGUCuaGg -5'
10776 3' -48.7 NC_002794.1 + 186242 0.71 0.985485
Target:  5'- aCCaGUgUCGAGUGCccaacgUCGACCGGAUCa -3'
miRNA:   3'- -GGcCG-AGUUCAUGa-----AGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 113713 0.71 0.986507
Target:  5'- uCUGGCUCAGGgacggcgucggcgACUgcacCGACCGGA-CCa -3'
miRNA:   3'- -GGCCGAGUUCa------------UGAa---GUUGGUCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 20535 0.7 0.991294
Target:  5'- aCUGGCguucgCGAcgACgggCGACCGGAUCCc -3'
miRNA:   3'- -GGCCGa----GUUcaUGaa-GUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 150614 0.7 0.991294
Target:  5'- gCCGGCUCugcgGGaGCUcgUgAGCCAGuAUCCc -3'
miRNA:   3'- -GGCCGAGu---UCaUGA--AgUUGGUC-UAGG- -5'
10776 3' -48.7 NC_002794.1 + 53649 0.7 0.99241
Target:  5'- gCCGGCguuccgCAaacGGUGCUcCAGgaCGGAUCCg -3'
miRNA:   3'- -GGCCGa-----GU---UCAUGAaGUUg-GUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 151214 0.7 0.99241
Target:  5'- gCCGGCUacCGGGU-CUUgGGCCAGggCUn -3'
miRNA:   3'- -GGCCGA--GUUCAuGAAgUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 99429 0.7 0.993409
Target:  5'- -gGGUcCGGGuUugUUgGACCGGAUCCg -3'
miRNA:   3'- ggCCGaGUUC-AugAAgUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 62818 0.7 0.993409
Target:  5'- gCCGGCgcc-GUACUUUcGCCcGGUCCc -3'
miRNA:   3'- -GGCCGaguuCAUGAAGuUGGuCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 182023 0.7 0.9943
Target:  5'- cCCGGCgucCGGGccgccgGCgaccaGACCAGGUCCu -3'
miRNA:   3'- -GGCCGa--GUUCa-----UGaag--UUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 71357 0.69 0.995091
Target:  5'- gCGGCgcagCAGGUGCggCAGCCgccccaGGAccUCCu -3'
miRNA:   3'- gGCCGa---GUUCAUGaaGUUGG------UCU--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.