miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 132127 0.67 0.999548
Target:  5'- gUCGGCUggCAGGUACUcgcUgGGCCcggGGAUCg -3'
miRNA:   3'- -GGCCGA--GUUCAUGA---AgUUGG---UCUAGg -5'
10776 3' -48.7 NC_002794.1 + 35007 0.67 0.999548
Target:  5'- cCCGGCaCuauGUACagCAACCGccuccuGAUCCg -3'
miRNA:   3'- -GGCCGaGuu-CAUGaaGUUGGU------CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 31679 0.67 0.999548
Target:  5'- cUCGGCgugCGAG-AUgaaCAGCCGGGUCa -3'
miRNA:   3'- -GGCCGa--GUUCaUGaa-GUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 69717 0.67 0.999548
Target:  5'- aUCGGCaccgUCGAGUGCc---GCCGGAgcgCCa -3'
miRNA:   3'- -GGCCG----AGUUCAUGaaguUGGUCUa--GG- -5'
10776 3' -48.7 NC_002794.1 + 45125 0.67 0.999438
Target:  5'- aUGGCUC-AGaACcgCAGCUGGAUCUg -3'
miRNA:   3'- gGCCGAGuUCaUGaaGUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 115629 0.67 0.999438
Target:  5'- gCGGgUCAGGUGgUUCAggGCguGAgCCa -3'
miRNA:   3'- gGCCgAGUUCAUgAAGU--UGguCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 184714 0.67 0.999307
Target:  5'- gUCGGCUCuuccGAGcgACaggcCAacGCCAGGUCCg -3'
miRNA:   3'- -GGCCGAG----UUCa-UGaa--GU--UGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 136638 0.67 0.999307
Target:  5'- gCGGCUCAggggcaGGUGCgugUUggUCAaGUCCu -3'
miRNA:   3'- gGCCGAGU------UCAUGa--AGuuGGUcUAGG- -5'
10776 3' -48.7 NC_002794.1 + 113830 0.67 0.999307
Target:  5'- cUCGGCcucCAGGUGCUUCugcagccuggcGugCAGuUCCg -3'
miRNA:   3'- -GGCCGa--GUUCAUGAAG-----------UugGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 44707 0.67 0.999307
Target:  5'- cCCGGCcgCGAccgcgGCgacgUCGGCCGGcgCCg -3'
miRNA:   3'- -GGCCGa-GUUca---UGa---AGUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 53281 0.67 0.999278
Target:  5'- gCGGCgagcgaccacucCAGGUGCcgagcggUCGGCCGGcgCCg -3'
miRNA:   3'- gGCCGa-----------GUUCAUGa------AGUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 152506 0.67 0.99915
Target:  5'- gCCaGCgaaCAGGUGCU----CCAGAUCCu -3'
miRNA:   3'- -GGcCGa--GUUCAUGAaguuGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 189126 0.67 0.99915
Target:  5'- gUGGUcCAAGUGCggggCcGCCAGcgCCa -3'
miRNA:   3'- gGCCGaGUUCAUGaa--GuUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 114729 0.67 0.998963
Target:  5'- gCGGCUcCGGGUucgUCgAGCCGGcgCCg -3'
miRNA:   3'- gGCCGA-GUUCAugaAG-UUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 133587 0.68 0.998742
Target:  5'- aCCGGUUCAAacgagaacGUGuCUgUCGACCAGGUa- -3'
miRNA:   3'- -GGCCGAGUU--------CAU-GA-AGUUGGUCUAgg -5'
10776 3' -48.7 NC_002794.1 + 72857 0.68 0.998742
Target:  5'- gCGGCUCuccGUcucgccucgACUccUCGGCCGGGUCg -3'
miRNA:   3'- gGCCGAGuu-CA---------UGA--AGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 75489 0.68 0.998482
Target:  5'- aCGGCcCGcGUACgagccggCAACCAG-UCCg -3'
miRNA:   3'- gGCCGaGUuCAUGaa-----GUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 85233 0.68 0.998482
Target:  5'- cUCGGCUCGAccaGCUgcCGACCAGAagCa -3'
miRNA:   3'- -GGCCGAGUUca-UGAa-GUUGGUCUagG- -5'
10776 3' -48.7 NC_002794.1 + 14123 0.68 0.998482
Target:  5'- aUCGGCUCcGGUACaacUguACCGuccGGUCCg -3'
miRNA:   3'- -GGCCGAGuUCAUGa--AguUGGU---CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 134572 0.68 0.998454
Target:  5'- gCCGGCgcagaAGGUGCUagaggaccUCGGgccgacuCCGGAUCCc -3'
miRNA:   3'- -GGCCGag---UUCAUGA--------AGUU-------GGUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.