miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 102781 0.68 0.998396
Target:  5'- aCCGGgUgcccaucacgccgcCAAGUACUUCGAgCAGGUg- -3'
miRNA:   3'- -GGCCgA--------------GUUCAUGAAGUUgGUCUAgg -5'
10776 3' -48.7 NC_002794.1 + 31796 0.68 0.997826
Target:  5'- cCCGaaCUCGAuGUACUUCAG-CAGAUCg -3'
miRNA:   3'- -GGCc-GAGUU-CAUGAAGUUgGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 98396 0.68 0.997826
Target:  5'- uUGGC-CAAGUGCgucgaggUCGAUCAGGauacggUCCa -3'
miRNA:   3'- gGCCGaGUUCAUGa------AGUUGGUCU------AGG- -5'
10776 3' -48.7 NC_002794.1 + 111466 0.68 0.997787
Target:  5'- uUGGCUCAAGgcGCUcgugaacUCuuCCGGAUCg -3'
miRNA:   3'- gGCCGAGUUCa-UGA-------AGuuGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 186999 0.68 0.997787
Target:  5'- gCCGGCugcgucgUCAGGUACggcgUCAG-CGGGUgCCg -3'
miRNA:   3'- -GGCCG-------AGUUCAUGa---AGUUgGUCUA-GG- -5'
10776 3' -48.7 NC_002794.1 + 179502 0.68 0.997417
Target:  5'- uCCGggauGCUgAAGUACcgCuGCCAGGUCUg -3'
miRNA:   3'- -GGC----CGAgUUCAUGaaGuUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 87050 0.68 0.997373
Target:  5'- gCGGCUCGGG-------GCCGGGUCCu -3'
miRNA:   3'- gGCCGAGUUCaugaaguUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 27629 0.69 0.996406
Target:  5'- gCCGGUcggUCAAGcgAUcagUCGACCGGuUCCg -3'
miRNA:   3'- -GGCCG---AGUUCa-UGa--AGUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 34669 0.69 0.996406
Target:  5'- gCCGGCUCGaccAGUACgucaccuuccucgUCAcccgccagcaggcccGCCGGcgCCa -3'
miRNA:   3'- -GGCCGAGU---UCAUGa------------AGU---------------UGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 39576 0.69 0.996406
Target:  5'- cCCGuGCUCAAGUAC---GAgCGGGUCg -3'
miRNA:   3'- -GGC-CGAGUUCAUGaagUUgGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 184240 0.69 0.996406
Target:  5'- cCCGGCcCAG--GCUcCGGcCCAGAUCCc -3'
miRNA:   3'- -GGCCGaGUUcaUGAaGUU-GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 141133 0.69 0.996406
Target:  5'- cCCGGCUcCGAGUcGCcgaAGCCggcGGAUCCc -3'
miRNA:   3'- -GGCCGA-GUUCA-UGaagUUGG---UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 64534 0.69 0.99579
Target:  5'- aUCGaGCUCGAG-GCguaCAACCAGcccGUCCa -3'
miRNA:   3'- -GGC-CGAGUUCaUGaa-GUUGGUC---UAGG- -5'
10776 3' -48.7 NC_002794.1 + 94823 0.69 0.99579
Target:  5'- aCCGGCg--GGUGCUgCGGCUGGA-CCg -3'
miRNA:   3'- -GGCCGaguUCAUGAaGUUGGUCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 135978 0.69 0.99579
Target:  5'- cCCGGCgcCGGGcuccuCUUCGcuguCCGGGUCCa -3'
miRNA:   3'- -GGCCGa-GUUCau---GAAGUu---GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 71357 0.69 0.995091
Target:  5'- gCGGCgcagCAGGUGCggCAGCCgccccaGGAccUCCu -3'
miRNA:   3'- gGCCGa---GUUCAUGaaGUUGG------UCU--AGG- -5'
10776 3' -48.7 NC_002794.1 + 182023 0.7 0.9943
Target:  5'- cCCGGCgucCGGGccgccgGCgaccaGACCAGGUCCu -3'
miRNA:   3'- -GGCCGa--GUUCa-----UGaag--UUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 99429 0.7 0.993409
Target:  5'- -gGGUcCGGGuUugUUgGACCGGAUCCg -3'
miRNA:   3'- ggCCGaGUUC-AugAAgUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 62818 0.7 0.993409
Target:  5'- gCCGGCgcc-GUACUUUcGCCcGGUCCc -3'
miRNA:   3'- -GGCCGaguuCAUGAAGuUGGuCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 151214 0.7 0.99241
Target:  5'- gCCGGCUacCGGGU-CUUgGGCCAGggCUn -3'
miRNA:   3'- -GGCCGA--GUUCAuGAAgUUGGUCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.