miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 14123 0.68 0.998482
Target:  5'- aUCGGCUCcGGUACaacUguACCGuccGGUCCg -3'
miRNA:   3'- -GGCCGAGuUCAUGa--AguUGGU---CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 14718 0.66 0.999773
Target:  5'- gCuGCUCGcg-GCUUCGGCUcgGGGUCCg -3'
miRNA:   3'- gGcCGAGUucaUGAAGUUGG--UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 16355 0.66 0.999773
Target:  5'- gUCGGCgccacccgCAcccgcGUGCacggCGGCCGGGUCCg -3'
miRNA:   3'- -GGCCGa-------GUu----CAUGaa--GUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 20309 0.73 0.958532
Target:  5'- uCUGGCUCGAGauggacCUUCG-CUGGGUCCg -3'
miRNA:   3'- -GGCCGAGUUCau----GAAGUuGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 20345 0.78 0.784395
Target:  5'- uCCGGCUCAGccGCUUCGagcuggaccaccugcGCCGGAUCg -3'
miRNA:   3'- -GGCCGAGUUcaUGAAGU---------------UGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 20535 0.7 0.991294
Target:  5'- aCUGGCguucgCGAcgACgggCGACCGGAUCCc -3'
miRNA:   3'- -GGCCGa----GUUcaUGaa-GUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 21512 0.74 0.931608
Target:  5'- uCCGGCUCGAGgacggGCggaucgggaUCGGCUAGcUCCg -3'
miRNA:   3'- -GGCCGAGUUCa----UGa--------AGUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 27629 0.69 0.996406
Target:  5'- gCCGGUcggUCAAGcgAUcagUCGACCGGuUCCg -3'
miRNA:   3'- -GGCCG---AGUUCa-UGa--AGUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 31679 0.67 0.999548
Target:  5'- cUCGGCgugCGAG-AUgaaCAGCCGGGUCa -3'
miRNA:   3'- -GGCCGa--GUUCaUGaa-GUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 31796 0.68 0.997826
Target:  5'- cCCGaaCUCGAuGUACUUCAG-CAGAUCg -3'
miRNA:   3'- -GGCc-GAGUU-CAUGAAGUUgGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 34669 0.69 0.996406
Target:  5'- gCCGGCUCGaccAGUACgucaccuuccucgUCAcccgccagcaggcccGCCGGcgCCa -3'
miRNA:   3'- -GGCCGAGU---UCAUGa------------AGU---------------UGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 35007 0.67 0.999548
Target:  5'- cCCGGCaCuauGUACagCAACCGccuccuGAUCCg -3'
miRNA:   3'- -GGCCGaGuu-CAUGaaGUUGGU------CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 37968 0.74 0.939655
Target:  5'- gCGGCUCGuGGUACgagccgaucgcggUCAGCCGGG-CCa -3'
miRNA:   3'- gGCCGAGU-UCAUGa------------AGUUGGUCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 39576 0.69 0.996406
Target:  5'- cCCGuGCUCAAGUAC---GAgCGGGUCg -3'
miRNA:   3'- -GGC-CGAGUUCAUGaagUUgGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 42128 0.66 0.999691
Target:  5'- uUCGGCgaCGAGUACUUgAgcgucuugccgaGCCAGAcggagaacgucucgUCCg -3'
miRNA:   3'- -GGCCGa-GUUCAUGAAgU------------UGGUCU--------------AGG- -5'
10776 3' -48.7 NC_002794.1 + 44707 0.67 0.999307
Target:  5'- cCCGGCcgCGAccgcgGCgacgUCGGCCGGcgCCg -3'
miRNA:   3'- -GGCCGa-GUUca---UGa---AGUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 45125 0.67 0.999438
Target:  5'- aUGGCUC-AGaACcgCAGCUGGAUCUg -3'
miRNA:   3'- gGCCGAGuUCaUGaaGUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 48306 0.66 0.999773
Target:  5'- -aGGCUCGAGUccaccgGCUUCGugCAcacGGcCCg -3'
miRNA:   3'- ggCCGAGUUCA------UGAAGUugGU---CUaGG- -5'
10776 3' -48.7 NC_002794.1 + 48705 0.67 0.999548
Target:  5'- gUCGGC-CcAGUAC-UCGguGCgCGGAUCCg -3'
miRNA:   3'- -GGCCGaGuUCAUGaAGU--UG-GUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 52965 0.73 0.965595
Target:  5'- cUCGGC-CAGGUGC-UCGGCCucGUCCu -3'
miRNA:   3'- -GGCCGaGUUCAUGaAGUUGGucUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.