miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 53281 0.67 0.999278
Target:  5'- gCGGCgagcgaccacucCAGGUGCcgagcggUCGGCCGGcgCCg -3'
miRNA:   3'- gGCCGa-----------GUUCAUGa------AGUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 53347 0.66 0.999861
Target:  5'- uCCGGCgccCAcGUcaAC-UCcGCCGGGUCCc -3'
miRNA:   3'- -GGCCGa--GUuCA--UGaAGuUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 53649 0.7 0.99241
Target:  5'- gCCGGCguuccgCAaacGGUGCUcCAGgaCGGAUCCg -3'
miRNA:   3'- -GGCCGa-----GU---UCAUGAaGUUg-GUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 60870 0.77 0.834675
Target:  5'- gCCGGCucUCAAGUACaUCGgcGCCGuGGUCCc -3'
miRNA:   3'- -GGCCG--AGUUCAUGaAGU--UGGU-CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 62818 0.7 0.993409
Target:  5'- gCCGGCgcc-GUACUUUcGCCcGGUCCc -3'
miRNA:   3'- -GGCCGaguuCAUGAAGuUGGuCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 64534 0.69 0.99579
Target:  5'- aUCGaGCUCGAG-GCguaCAACCAGcccGUCCa -3'
miRNA:   3'- -GGC-CGAGUUCaUGaa-GUUGGUC---UAGG- -5'
10776 3' -48.7 NC_002794.1 + 67510 0.81 0.649085
Target:  5'- aUCGuGCUgAGGUACUcgaCGACCGGAUCCg -3'
miRNA:   3'- -GGC-CGAgUUCAUGAa--GUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 69141 0.66 0.999712
Target:  5'- gCCGGC-CAAGccGCUUCGcCCAcGUUCa -3'
miRNA:   3'- -GGCCGaGUUCa-UGAAGUuGGUcUAGG- -5'
10776 3' -48.7 NC_002794.1 + 69717 0.67 0.999548
Target:  5'- aUCGGCaccgUCGAGUGCc---GCCGGAgcgCCa -3'
miRNA:   3'- -GGCCG----AGUUCAUGaaguUGGUCUa--GG- -5'
10776 3' -48.7 NC_002794.1 + 71357 0.69 0.995091
Target:  5'- gCGGCgcagCAGGUGCggCAGCCgccccaGGAccUCCu -3'
miRNA:   3'- gGCCGa---GUUCAUGaaGUUGG------UCU--AGG- -5'
10776 3' -48.7 NC_002794.1 + 72857 0.68 0.998742
Target:  5'- gCGGCUCuccGUcucgccucgACUccUCGGCCGGGUCg -3'
miRNA:   3'- gGCCGAGuu-CA---------UGA--AGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 73192 0.72 0.977097
Target:  5'- uCCGGUUCcaacGGUACUUC-AUCAGcUCCc -3'
miRNA:   3'- -GGCCGAGu---UCAUGAAGuUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 73750 0.76 0.866974
Target:  5'- cCCGGCUCGAacgcGU-CUUCGAggaacuggcgcuCCAGGUCCu -3'
miRNA:   3'- -GGCCGAGUU----CAuGAAGUU------------GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 75489 0.68 0.998482
Target:  5'- aCGGCcCGcGUACgagccggCAACCAG-UCCg -3'
miRNA:   3'- gGCCGaGUuCAUGaa-----GUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 78686 0.66 0.999822
Target:  5'- gCCGGCcgCAuGUGCggcCGACaCGGcgCCg -3'
miRNA:   3'- -GGCCGa-GUuCAUGaa-GUUG-GUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 81408 0.71 0.985485
Target:  5'- cCCGGCUCGGGaGCUgcUCGcCCGGcUUCg -3'
miRNA:   3'- -GGCCGAGUUCaUGA--AGUuGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 85233 0.68 0.998482
Target:  5'- cUCGGCUCGAccaGCUgcCGACCAGAagCa -3'
miRNA:   3'- -GGCCGAGUUca-UGAa-GUUGGUCUagG- -5'
10776 3' -48.7 NC_002794.1 + 86255 0.75 0.895736
Target:  5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3'
miRNA:   3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5'
10776 3' -48.7 NC_002794.1 + 86447 0.75 0.895736
Target:  5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3'
miRNA:   3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5'
10776 3' -48.7 NC_002794.1 + 86615 0.75 0.895736
Target:  5'- uCCGGCUCGAGcc---CGACCGGAugcUCCg -3'
miRNA:   3'- -GGCCGAGUUCaugaaGUUGGUCU---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.