miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 87050 0.68 0.997373
Target:  5'- gCGGCUCGGG-------GCCGGGUCCu -3'
miRNA:   3'- gGCCGAGUUCaugaaguUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 92362 1.16 0.0082
Target:  5'- aCCGGCUCAAGUACUUCAACCAGAUCCu -3'
miRNA:   3'- -GGCCGAGUUCAUGAAGUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 92562 0.73 0.950534
Target:  5'- gCCGGCgccacgCAGGc-CUUCAACCuGGAUCUg -3'
miRNA:   3'- -GGCCGa-----GUUCauGAAGUUGG-UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 94823 0.69 0.99579
Target:  5'- aCCGGCg--GGUGCUgCGGCUGGA-CCg -3'
miRNA:   3'- -GGCCGaguUCAUGAaGUUGGUCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 98396 0.68 0.997826
Target:  5'- uUGGC-CAAGUGCgucgaggUCGAUCAGGauacggUCCa -3'
miRNA:   3'- gGCCGaGUUCAUGa------AGUUGGUCU------AGG- -5'
10776 3' -48.7 NC_002794.1 + 99429 0.7 0.993409
Target:  5'- -gGGUcCGGGuUugUUgGACCGGAUCCg -3'
miRNA:   3'- ggCCGaGUUC-AugAAgUUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 101923 0.71 0.985485
Target:  5'- aCgGGUUCAcGgGCUUCAGCCAGggCa -3'
miRNA:   3'- -GgCCGAGUuCaUGAAGUUGGUCuaGg -5'
10776 3' -48.7 NC_002794.1 + 102781 0.68 0.998396
Target:  5'- aCCGGgUgcccaucacgccgcCAAGUACUUCGAgCAGGUg- -3'
miRNA:   3'- -GGCCgA--------------GUUCAUGAAGUUgGUCUAgg -5'
10776 3' -48.7 NC_002794.1 + 103733 0.93 0.177033
Target:  5'- -aGGCUCAGGUACUUCugcuCCAGGUCCg -3'
miRNA:   3'- ggCCGAGUUCAUGAAGuu--GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 107329 0.66 0.999822
Target:  5'- gCGGUUCG---GCUUCGGuCCguGGGUCCg -3'
miRNA:   3'- gGCCGAGUucaUGAAGUU-GG--UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 107885 0.75 0.908686
Target:  5'- gCGGCgcggCGGGUGCggCuGCCGGGUCUg -3'
miRNA:   3'- gGCCGa---GUUCAUGaaGuUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 111466 0.68 0.997787
Target:  5'- uUGGCUCAAGgcGCUcgugaacUCuuCCGGAUCg -3'
miRNA:   3'- gGCCGAGUUCa-UGA-------AGuuGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 113713 0.71 0.986507
Target:  5'- uCUGGCUCAGGgacggcgucggcgACUgcacCGACCGGA-CCa -3'
miRNA:   3'- -GGCCGAGUUCa------------UGAa---GUUGGUCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 113830 0.67 0.999307
Target:  5'- cUCGGCcucCAGGUGCUUCugcagccuggcGugCAGuUCCg -3'
miRNA:   3'- -GGCCGa--GUUCAUGAAG-----------UugGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 114729 0.67 0.998963
Target:  5'- gCGGCUcCGGGUucgUCgAGCCGGcgCCg -3'
miRNA:   3'- gGCCGA-GUUCAugaAG-UUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 115629 0.67 0.999438
Target:  5'- gCGGgUCAGGUGgUUCAggGCguGAgCCa -3'
miRNA:   3'- gGCCgAGUUCAUgAAGU--UGguCUaGG- -5'
10776 3' -48.7 NC_002794.1 + 116803 0.73 0.962178
Target:  5'- gCCGGCUCGGGcGCcgUAGCgCGGGUCg -3'
miRNA:   3'- -GGCCGAGUUCaUGaaGUUG-GUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 122501 0.72 0.974533
Target:  5'- gUCGGCgccgCAGGaggGCUUCuccGGCCGGAUCg -3'
miRNA:   3'- -GGCCGa---GUUCa--UGAAG---UUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 122677 0.66 0.999712
Target:  5'- cCCGGCU---GUGCcggUCGcGCCAGcgCCg -3'
miRNA:   3'- -GGCCGAguuCAUGa--AGU-UGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 129750 0.73 0.950534
Target:  5'- gCCGcGUUCuGGUACUUCGgauACCgguGGAUCCu -3'
miRNA:   3'- -GGC-CGAGuUCAUGAAGU---UGG---UCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.