miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 190703 0.66 0.999822
Target:  5'- cCCGGCgcagcgUCGGGUuCUcCAGCCGGAg-- -3'
miRNA:   3'- -GGCCG------AGUUCAuGAaGUUGGUCUagg -5'
10776 3' -48.7 NC_002794.1 + 189126 0.67 0.99915
Target:  5'- gUGGUcCAAGUGCggggCcGCCAGcgCCa -3'
miRNA:   3'- gGCCGaGUUCAUGaa--GuUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 188086 0.74 0.926254
Target:  5'- uUCGGC-CAAGUACUgcUCGGCUaacuGGAUCUg -3'
miRNA:   3'- -GGCCGaGUUCAUGA--AGUUGG----UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 188043 0.72 0.971766
Target:  5'- cCCGGaCgcggCGAGUcucgACUUCGGCCAGcgUCa -3'
miRNA:   3'- -GGCC-Ga---GUUCA----UGAAGUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 187041 0.66 0.999638
Target:  5'- aCCGGCUCGcAGUcccggagcccGCggcCcGCCAGGUgCCg -3'
miRNA:   3'- -GGCCGAGU-UCA----------UGaa-GuUGGUCUA-GG- -5'
10776 3' -48.7 NC_002794.1 + 186999 0.68 0.997787
Target:  5'- gCCGGCugcgucgUCAGGUACggcgUCAG-CGGGUgCCg -3'
miRNA:   3'- -GGCCG-------AGUUCAUGa---AGUUgGUCUA-GG- -5'
10776 3' -48.7 NC_002794.1 + 186242 0.71 0.985485
Target:  5'- aCCaGUgUCGAGUGCccaacgUCGACCGGAUCa -3'
miRNA:   3'- -GGcCG-AGUUCAUGa-----AGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 184714 0.67 0.999307
Target:  5'- gUCGGCUCuuccGAGcgACaggcCAacGCCAGGUCCg -3'
miRNA:   3'- -GGCCGAG----UUCa-UGaa--GU--UGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 184240 0.69 0.996406
Target:  5'- cCCGGCcCAG--GCUcCGGcCCAGAUCCc -3'
miRNA:   3'- -GGCCGaGUUcaUGAaGUU-GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 182949 0.74 0.946173
Target:  5'- gCCgGGCUCGAGccgACggCGGCCGGcUCCu -3'
miRNA:   3'- -GG-CCGAGUUCa--UGaaGUUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 182023 0.7 0.9943
Target:  5'- cCCGGCgucCGGGccgccgGCgaccaGACCAGGUCCu -3'
miRNA:   3'- -GGCCGa--GUUCa-----UGaag--UUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 180749 0.66 0.999861
Target:  5'- uCCGGCUCcucGGcgGCUUCGGCgGcaacuGUCCg -3'
miRNA:   3'- -GGCCGAGu--UCa-UGAAGUUGgUc----UAGG- -5'
10776 3' -48.7 NC_002794.1 + 179502 0.68 0.997417
Target:  5'- uCCGggauGCUgAAGUACcgCuGCCAGGUCUg -3'
miRNA:   3'- -GGC----CGAgUUCAUGaaGuUGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 178644 0.71 0.983652
Target:  5'- aCCGGCUUucuGGUcgGCggUCcuCCAGAUCUa -3'
miRNA:   3'- -GGCCGAGu--UCA--UGa-AGuuGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 165913 0.66 0.999773
Target:  5'- uCUGGUUCGGGUAUcUCGcACCGu-UCCa -3'
miRNA:   3'- -GGCCGAGUUCAUGaAGU-UGGUcuAGG- -5'
10776 3' -48.7 NC_002794.1 + 160622 0.66 0.999638
Target:  5'- aUCGGCUCGGG-ACaau-ACCGGAUUa -3'
miRNA:   3'- -GGCCGAGUUCaUGaaguUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 155909 0.76 0.866974
Target:  5'- aCCGGCUCGAcGUGCgg-AGCCGGGUgCu -3'
miRNA:   3'- -GGCCGAGUU-CAUGaagUUGGUCUAgG- -5'
10776 3' -48.7 NC_002794.1 + 152506 0.67 0.99915
Target:  5'- gCCaGCgaaCAGGUGCU----CCAGAUCCu -3'
miRNA:   3'- -GGcCGa--GUUCAUGAaguuGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 151961 0.66 0.999638
Target:  5'- aCGGCccCGGGUGCUccUCGGCCcgggacguGGUCUa -3'
miRNA:   3'- gGCCGa-GUUCAUGA--AGUUGGu-------CUAGG- -5'
10776 3' -48.7 NC_002794.1 + 151242 0.73 0.962178
Target:  5'- aCCGGCUCAccgucGUGCUcuUCAACgAGcgCUg -3'
miRNA:   3'- -GGCCGAGUu----CAUGA--AGUUGgUCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.