miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 3' -48.7 NC_002794.1 + 151214 0.7 0.99241
Target:  5'- gCCGGCUacCGGGU-CUUgGGCCAGggCUn -3'
miRNA:   3'- -GGCCGA--GUUCAuGAAgUUGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 150614 0.7 0.991294
Target:  5'- gCCGGCUCugcgGGaGCUcgUgAGCCAGuAUCCc -3'
miRNA:   3'- -GGCCGAGu---UCaUGA--AgUUGGUC-UAGG- -5'
10776 3' -48.7 NC_002794.1 + 149002 0.66 0.999822
Target:  5'- gUCGGaUCGAcUGUUUCAACCGGGUCa -3'
miRNA:   3'- -GGCCgAGUUcAUGAAGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 143012 0.74 0.941567
Target:  5'- cCCGG-UCAGcGUGCggUCGGCCGGGUCg -3'
miRNA:   3'- -GGCCgAGUU-CAUGa-AGUUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 141619 0.66 0.999861
Target:  5'- aCCGGCUCGcGGU-CUagCGACgGGAaggCCg -3'
miRNA:   3'- -GGCCGAGU-UCAuGAa-GUUGgUCUa--GG- -5'
10776 3' -48.7 NC_002794.1 + 141133 0.69 0.996406
Target:  5'- cCCGGCUcCGAGUcGCcgaAGCCggcGGAUCCc -3'
miRNA:   3'- -GGCCGA-GUUCA-UGaagUUGG---UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 138008 0.67 0.999548
Target:  5'- -gGGCgcgCAGGUACgcc-ACCAGuUCCg -3'
miRNA:   3'- ggCCGa--GUUCAUGaaguUGGUCuAGG- -5'
10776 3' -48.7 NC_002794.1 + 137028 0.74 0.936712
Target:  5'- -aGGUUCAGGUGCUcgUCGAUCGGgAUCUc -3'
miRNA:   3'- ggCCGAGUUCAUGA--AGUUGGUC-UAGG- -5'
10776 3' -48.7 NC_002794.1 + 136638 0.67 0.999307
Target:  5'- gCGGCUCAggggcaGGUGCgugUUggUCAaGUCCu -3'
miRNA:   3'- gGCCGAGU------UCAUGa--AGuuGGUcUAGG- -5'
10776 3' -48.7 NC_002794.1 + 135978 0.69 0.99579
Target:  5'- cCCGGCgcCGGGcuccuCUUCGcuguCCGGGUCCa -3'
miRNA:   3'- -GGCCGa-GUUCau---GAAGUu---GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 134572 0.68 0.998454
Target:  5'- gCCGGCgcagaAGGUGCUagaggaccUCGGgccgacuCCGGAUCCc -3'
miRNA:   3'- -GGCCGag---UUCAUGA--------AGUU-------GGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 133587 0.68 0.998742
Target:  5'- aCCGGUUCAAacgagaacGUGuCUgUCGACCAGGUa- -3'
miRNA:   3'- -GGCCGAGUU--------CAU-GA-AGUUGGUCUAgg -5'
10776 3' -48.7 NC_002794.1 + 132127 0.67 0.999548
Target:  5'- gUCGGCUggCAGGUACUcgcUgGGCCcggGGAUCg -3'
miRNA:   3'- -GGCCGA--GUUCAUGA---AgUUGG---UCUAGg -5'
10776 3' -48.7 NC_002794.1 + 131831 0.72 0.977097
Target:  5'- aCGGuCUCGcgcgucGGUGCUaaguUCGcACCGGAUCCc -3'
miRNA:   3'- gGCC-GAGU------UCAUGA----AGU-UGGUCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 130875 0.66 0.999638
Target:  5'- gCGGgUCAGGUGga-CGAUCuGAUCCa -3'
miRNA:   3'- gGCCgAGUUCAUgaaGUUGGuCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 129750 0.73 0.950534
Target:  5'- gCCGcGUUCuGGUACUUCGgauACCgguGGAUCCu -3'
miRNA:   3'- -GGC-CGAGuUCAUGAAGU---UGG---UCUAGG- -5'
10776 3' -48.7 NC_002794.1 + 122677 0.66 0.999712
Target:  5'- cCCGGCU---GUGCcggUCGcGCCAGcgCCg -3'
miRNA:   3'- -GGCCGAguuCAUGa--AGU-UGGUCuaGG- -5'
10776 3' -48.7 NC_002794.1 + 122501 0.72 0.974533
Target:  5'- gUCGGCgccgCAGGaggGCUUCuccGGCCGGAUCg -3'
miRNA:   3'- -GGCCGa---GUUCa--UGAAG---UUGGUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 116803 0.73 0.962178
Target:  5'- gCCGGCUCGGGcGCcgUAGCgCGGGUCg -3'
miRNA:   3'- -GGCCGAGUUCaUGaaGUUG-GUCUAGg -5'
10776 3' -48.7 NC_002794.1 + 115629 0.67 0.999438
Target:  5'- gCGGgUCAGGUGgUUCAggGCguGAgCCa -3'
miRNA:   3'- gGCCgAGUUCAUgAAGU--UGguCUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.