miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 82761 0.66 0.959049
Target:  5'- cGCGG-ACUCGCUccgCGAaCCCucGCAa -3'
miRNA:   3'- -CGCCuUGAGCGAcuaGCU-GGGcuCGU- -5'
10776 5' -55.7 NC_002794.1 + 116076 0.66 0.959049
Target:  5'- cGCGGAGCgcucggCGCggcGGUCGucGCCgGGGUc -3'
miRNA:   3'- -CGCCUUGa-----GCGa--CUAGC--UGGgCUCGu -5'
10776 5' -55.7 NC_002794.1 + 104624 0.66 0.959049
Target:  5'- uCGGccagcAGCUCGUUG-UCGcGCgCCGAGCAg -3'
miRNA:   3'- cGCC-----UUGAGCGACuAGC-UG-GGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 110661 0.66 0.958691
Target:  5'- gGCGGcugcagacagugcAGCaCGCUGugGUCGucGCCCGAGUAg -3'
miRNA:   3'- -CGCC-------------UUGaGCGAC--UAGC--UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 71185 0.66 0.955377
Target:  5'- gGCGGAACa-GgaGAUCGACC--AGCGc -3'
miRNA:   3'- -CGCCUUGagCgaCUAGCUGGgcUCGU- -5'
10776 5' -55.7 NC_002794.1 + 131515 0.66 0.955377
Target:  5'- --cGAcCUCGCccgUGAUCGGCgCCGGGCc -3'
miRNA:   3'- cgcCUuGAGCG---ACUAGCUG-GGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 43642 0.66 0.951489
Target:  5'- gGUGGAACaCGCUGccgccgaaCGAgCCGGGCu -3'
miRNA:   3'- -CGCCUUGaGCGACua------GCUgGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 187824 0.66 0.951489
Target:  5'- aGCGGAGCgCGCUcGGcUCGGCgcgCCGAGg- -3'
miRNA:   3'- -CGCCUUGaGCGA-CU-AGCUG---GGCUCgu -5'
10776 5' -55.7 NC_002794.1 + 145331 0.66 0.94738
Target:  5'- gGCGGcGCUCGggcccGAgcgGGCCCGAGCu -3'
miRNA:   3'- -CGCCuUGAGCga---CUag-CUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 115583 0.66 0.946957
Target:  5'- aCGGGACguagCgGCUGcgGUCGACCCGcucgcccGGCGc -3'
miRNA:   3'- cGCCUUGa---G-CGAC--UAGCUGGGC-------UCGU- -5'
10776 5' -55.7 NC_002794.1 + 95761 0.66 0.943048
Target:  5'- cGCGGGGCggcggcCGCgacggCGGCCgGGGCGa -3'
miRNA:   3'- -CGCCUUGa-----GCGacua-GCUGGgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 138713 0.66 0.943048
Target:  5'- gGCGuGGACUCGC--GUCGAgCCG-GCu -3'
miRNA:   3'- -CGC-CUUGAGCGacUAGCUgGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 54999 0.66 0.941704
Target:  5'- gGCGGcGACUCGCcGggCGuccgccgccgcgccGCCgCGAGCAc -3'
miRNA:   3'- -CGCC-UUGAGCGaCuaGC--------------UGG-GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 177732 0.66 0.94034
Target:  5'- gGCGGAuccgaccgACUCGCgcgaGUCGACCggaucuuaggacaagCGGGCGu -3'
miRNA:   3'- -CGCCU--------UGAGCGac--UAGCUGG---------------GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 3303 0.66 0.938489
Target:  5'- -aGGAAUgaggaaCGCUGAgucaaaaCGACCCGAGg- -3'
miRNA:   3'- cgCCUUGa-----GCGACUa------GCUGGGCUCgu -5'
10776 5' -55.7 NC_002794.1 + 104740 0.66 0.938489
Target:  5'- gGUGGAGCgcucgaucUCGUgguagcGGUCGGCCCGccGGCGc -3'
miRNA:   3'- -CGCCUUG--------AGCGa-----CUAGCUGGGC--UCGU- -5'
10776 5' -55.7 NC_002794.1 + 93317 0.66 0.938021
Target:  5'- gGCGacuaccuGAGCaCGCUGcaCGGCCUGAGCAc -3'
miRNA:   3'- -CGC-------CUUGaGCGACuaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 150622 0.67 0.935645
Target:  5'- uGCgGGAGCUCGUgagccaGuaucccggcacgcgcGUCGACCUGGGCu -3'
miRNA:   3'- -CG-CCUUGAGCGa-----C---------------UAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 14472 0.67 0.933704
Target:  5'- aGCGGcgcgccgcGCUCGCUGuucgcggcggCGGCCCGcGCu -3'
miRNA:   3'- -CGCCu-------UGAGCGACua--------GCUGGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 104438 0.67 0.933704
Target:  5'- cCGGAcgccGC-CGCgGG-CGGCCCGAGCc -3'
miRNA:   3'- cGCCU----UGaGCGaCUaGCUGGGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.