miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 92401 1.1 0.003618
Target:  5'- aGCGGAACUCGCUGAUCGACCCGAGCAc -3'
miRNA:   3'- -CGCCUUGAGCGACUAGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 128208 0.87 0.117506
Target:  5'- aUGGGACUCGaCcGAUCGACCCGAGCGa -3'
miRNA:   3'- cGCCUUGAGC-GaCUAGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 149754 0.75 0.520081
Target:  5'- gGCGGGAC-CGCUGucUCGGCCUguugGAGCGg -3'
miRNA:   3'- -CGCCUUGaGCGACu-AGCUGGG----CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 145624 0.73 0.618624
Target:  5'- -aGGAGCUCgGCccggaGAUCgGACCCGAGCu -3'
miRNA:   3'- cgCCUUGAG-CGa----CUAG-CUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 153940 0.73 0.658676
Target:  5'- cGCGGAcACUCGCUGGcUCuacccuGGCCCG-GCGa -3'
miRNA:   3'- -CGCCU-UGAGCGACU-AG------CUGGGCuCGU- -5'
10776 5' -55.7 NC_002794.1 + 108443 0.73 0.668658
Target:  5'- gGCGGcACUCGCggcggCGGCCCGccGGCAc -3'
miRNA:   3'- -CGCCuUGAGCGacua-GCUGGGC--UCGU- -5'
10776 5' -55.7 NC_002794.1 + 49136 0.72 0.678611
Target:  5'- cCGGAGgUCGUUG-UCGACCCGAaaccaGCGg -3'
miRNA:   3'- cGCCUUgAGCGACuAGCUGGGCU-----CGU- -5'
10776 5' -55.7 NC_002794.1 + 94268 0.72 0.698399
Target:  5'- cGCGucAUUUGCgcgGcgCGGCCCGAGCGg -3'
miRNA:   3'- -CGCcuUGAGCGa--CuaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 53119 0.72 0.717973
Target:  5'- cCGGAGCUCGC--GUCGACCgCG-GCGc -3'
miRNA:   3'- cGCCUUGAGCGacUAGCUGG-GCuCGU- -5'
10776 5' -55.7 NC_002794.1 + 80317 0.71 0.727659
Target:  5'- cGUGGAACccUCGCUGAgCGGgcuCCUGAGCc -3'
miRNA:   3'- -CGCCUUG--AGCGACUaGCU---GGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 147801 0.71 0.746786
Target:  5'- uCGGAGCUgaCGCUGAagCGGCuCCaGAGCAc -3'
miRNA:   3'- cGCCUUGA--GCGACUa-GCUG-GG-CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 150673 0.71 0.756209
Target:  5'- cCGcGAACgaggUGCUGAUCGucggcaGCCCGAGUAc -3'
miRNA:   3'- cGC-CUUGa---GCGACUAGC------UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 41682 0.7 0.792765
Target:  5'- cGCaGGAGCgcccggacCGCcgGAUCGuCCCGGGCGc -3'
miRNA:   3'- -CG-CCUUGa-------GCGa-CUAGCuGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 50738 0.7 0.800703
Target:  5'- gGCGGccgccucGACUCGCUcGUcCGcCCCGGGCGg -3'
miRNA:   3'- -CGCC-------UUGAGCGAcUA-GCuGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 54410 0.7 0.801578
Target:  5'- cGCGGAGCUCGCaGAUgugCGccACCUccuuGAGCAu -3'
miRNA:   3'- -CGCCUUGAGCGaCUA---GC--UGGG----CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 117184 0.7 0.817911
Target:  5'- cCGGAuUUCGCgcaGAUCGgcgucggGCCCGGGCGg -3'
miRNA:   3'- cGCCUuGAGCGa--CUAGC-------UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 92255 0.7 0.818755
Target:  5'- gGCGGcg-UCGCUGGcggCGGCgCCGGGCGa -3'
miRNA:   3'- -CGCCuugAGCGACUa--GCUG-GGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 68915 0.7 0.818755
Target:  5'- cGCGGGGCUCGCggcguccucGUCGcCCgCGGGCc -3'
miRNA:   3'- -CGCCUUGAGCGac-------UAGCuGG-GCUCGu -5'
10776 5' -55.7 NC_002794.1 + 113490 0.69 0.835282
Target:  5'- uGCaGGAGCUCGC-GcgCGGCCgaGAGCc -3'
miRNA:   3'- -CG-CCUUGAGCGaCuaGCUGGg-CUCGu -5'
10776 5' -55.7 NC_002794.1 + 131406 0.69 0.835282
Target:  5'- aCGGc-CUCGCccgUGAUCGGCaCCGGGCc -3'
miRNA:   3'- cGCCuuGAGCG---ACUAGCUG-GGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.