miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 99875 0.69 0.843283
Target:  5'- uCGGccGACUCcaaggaGCUGAUCcACCCGGGCu -3'
miRNA:   3'- cGCC--UUGAG------CGACUAGcUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 92699 0.69 0.843283
Target:  5'- gGUGGAcaACcCGCUGAcCGugUCGAGCc -3'
miRNA:   3'- -CGCCU--UGaGCGACUaGCugGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 26086 0.69 0.843283
Target:  5'- cGCGGGGCagCGCcGA-CGGCCCcGGCGa -3'
miRNA:   3'- -CGCCUUGa-GCGaCUaGCUGGGcUCGU- -5'
10776 5' -55.7 NC_002794.1 + 147380 0.69 0.851101
Target:  5'- cGUGcGAGCUgcaGCUGAUCGGCUcgauccgccaCGAGCGc -3'
miRNA:   3'- -CGC-CUUGAg--CGACUAGCUGG----------GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 189561 0.69 0.851101
Target:  5'- gGCGGucccGCUCGgUcGGcCGGCCCGGGCc -3'
miRNA:   3'- -CGCCu---UGAGCgA-CUaGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 123666 0.69 0.858728
Target:  5'- aGCuGGugUCGC---UCGGCCCGGGCu -3'
miRNA:   3'- -CGcCUugAGCGacuAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 126318 0.69 0.866159
Target:  5'- aGCGGAgcgugacccGCUCGCUGAccgccgucuUCGuguCCCG-GCu -3'
miRNA:   3'- -CGCCU---------UGAGCGACU---------AGCu--GGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 127812 0.69 0.866159
Target:  5'- cGCcGAGCgagCGCccgucGUCGGCCCGAGCc -3'
miRNA:   3'- -CGcCUUGa--GCGac---UAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 44930 0.69 0.866159
Target:  5'- aGgGuGAGCUCcaagagGCUGGcggugUCGACCCGGGUAc -3'
miRNA:   3'- -CgC-CUUGAG------CGACU-----AGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 44171 0.68 0.880411
Target:  5'- gGCGcGAGCggcgGCUcGUCGACuCCGGGCGa -3'
miRNA:   3'- -CGC-CUUGag--CGAcUAGCUG-GGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 19474 0.68 0.880411
Target:  5'- gGCGGGACcCGCcGGUCG-CCCGcaccgacgacGGCGg -3'
miRNA:   3'- -CGCCUUGaGCGaCUAGCuGGGC----------UCGU- -5'
10776 5' -55.7 NC_002794.1 + 118251 0.68 0.887222
Target:  5'- gGCGG-GCU-GgaGGUCGGCCgGGGCGg -3'
miRNA:   3'- -CGCCuUGAgCgaCUAGCUGGgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 128947 0.68 0.891205
Target:  5'- gGUGGAGCcugcgccggacgagUCGCUcGAUCuggugcaGAUCCGAGCGc -3'
miRNA:   3'- -CGCCUUG--------------AGCGA-CUAG-------CUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 121928 0.68 0.893817
Target:  5'- cGCGGGggaagaggccgACgCGCUGAUCGagcGCCUgGAGCGc -3'
miRNA:   3'- -CGCCU-----------UGaGCGACUAGC---UGGG-CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 122750 0.68 0.893817
Target:  5'- cGCGGcaucCUCgaGCUGAUCGAgcgcuCCgCGAGCGg -3'
miRNA:   3'- -CGCCuu--GAG--CGACUAGCU-----GG-GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 119362 0.68 0.900192
Target:  5'- uGCGGAccucCUCGUucgcgUGGUCGAgCUGGGCc -3'
miRNA:   3'- -CGCCUu---GAGCG-----ACUAGCUgGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 111426 0.68 0.900192
Target:  5'- cGCGGAGC-CGCcaGAUCGGCaguCgGGGCGg -3'
miRNA:   3'- -CGCCUUGaGCGa-CUAGCUG---GgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 130009 0.68 0.900192
Target:  5'- cCGGAGCgUGCgGGUCGGCCUcgcgcgagGAGCGu -3'
miRNA:   3'- cGCCUUGaGCGaCUAGCUGGG--------CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 145514 0.68 0.906345
Target:  5'- -aGGggUgCGCgaGGcCGGCCCGAGCGc -3'
miRNA:   3'- cgCCuuGaGCGa-CUaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 92306 0.68 0.906345
Target:  5'- gGCGGGGCUgggCGCgGGcggCGgggGCCCGGGCGg -3'
miRNA:   3'- -CGCCUUGA---GCGaCUa--GC---UGGGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.