Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10776 | 5' | -55.7 | NC_002794.1 | + | 94268 | 0.72 | 0.698399 |
Target: 5'- cGCGucAUUUGCgcgGcgCGGCCCGAGCGg -3' miRNA: 3'- -CGCcuUGAGCGa--CuaGCUGGGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 49136 | 0.72 | 0.678611 |
Target: 5'- cCGGAGgUCGUUG-UCGACCCGAaaccaGCGg -3' miRNA: 3'- cGCCUUgAGCGACuAGCUGGGCU-----CGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 108443 | 0.73 | 0.668658 |
Target: 5'- gGCGGcACUCGCggcggCGGCCCGccGGCAc -3' miRNA: 3'- -CGCCuUGAGCGacua-GCUGGGC--UCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 153940 | 0.73 | 0.658676 |
Target: 5'- cGCGGAcACUCGCUGGcUCuacccuGGCCCG-GCGa -3' miRNA: 3'- -CGCCU-UGAGCGACU-AG------CUGGGCuCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 145624 | 0.73 | 0.618624 |
Target: 5'- -aGGAGCUCgGCccggaGAUCgGACCCGAGCu -3' miRNA: 3'- cgCCUUGAG-CGa----CUAG-CUGGGCUCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 149754 | 0.75 | 0.520081 |
Target: 5'- gGCGGGAC-CGCUGucUCGGCCUguugGAGCGg -3' miRNA: 3'- -CGCCUUGaGCGACu-AGCUGGG----CUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 128208 | 0.87 | 0.117506 |
Target: 5'- aUGGGACUCGaCcGAUCGACCCGAGCGa -3' miRNA: 3'- cGCCUUGAGC-GaCUAGCUGGGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 92401 | 1.1 | 0.003618 |
Target: 5'- aGCGGAACUCGCUGAUCGACCCGAGCAc -3' miRNA: 3'- -CGCCUUGAGCGACUAGCUGGGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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