miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 3303 0.66 0.938489
Target:  5'- -aGGAAUgaggaaCGCUGAgucaaaaCGACCCGAGg- -3'
miRNA:   3'- cgCCUUGa-----GCGACUa------GCUGGGCUCgu -5'
10776 5' -55.7 NC_002794.1 + 14472 0.67 0.933704
Target:  5'- aGCGGcgcgccgcGCUCGCUGuucgcggcggCGGCCCGcGCu -3'
miRNA:   3'- -CGCCu-------UGAGCGACua--------GCUGGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 19474 0.68 0.880411
Target:  5'- gGCGGGACcCGCcGGUCG-CCCGcaccgacgacGGCGg -3'
miRNA:   3'- -CGCCUUGaGCGaCUAGCuGGGC----------UCGU- -5'
10776 5' -55.7 NC_002794.1 + 26086 0.69 0.843283
Target:  5'- cGCGGGGCagCGCcGA-CGGCCCcGGCGa -3'
miRNA:   3'- -CGCCUUGa-GCGaCUaGCUGGGcUCGU- -5'
10776 5' -55.7 NC_002794.1 + 41682 0.7 0.792765
Target:  5'- cGCaGGAGCgcccggacCGCcgGAUCGuCCCGGGCGc -3'
miRNA:   3'- -CG-CCUUGa-------GCGa-CUAGCuGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 43642 0.66 0.951489
Target:  5'- gGUGGAACaCGCUGccgccgaaCGAgCCGGGCu -3'
miRNA:   3'- -CGCCUUGaGCGACua------GCUgGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 44171 0.68 0.880411
Target:  5'- gGCGcGAGCggcgGCUcGUCGACuCCGGGCGa -3'
miRNA:   3'- -CGC-CUUGag--CGAcUAGCUG-GGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 44930 0.69 0.866159
Target:  5'- aGgGuGAGCUCcaagagGCUGGcggugUCGACCCGGGUAc -3'
miRNA:   3'- -CgC-CUUGAG------CGACU-----AGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 49136 0.72 0.678611
Target:  5'- cCGGAGgUCGUUG-UCGACCCGAaaccaGCGg -3'
miRNA:   3'- cGCCUUgAGCGACuAGCUGGGCU-----CGU- -5'
10776 5' -55.7 NC_002794.1 + 50738 0.7 0.800703
Target:  5'- gGCGGccgccucGACUCGCUcGUcCGcCCCGGGCGg -3'
miRNA:   3'- -CGCC-------UUGAGCGAcUA-GCuGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 53119 0.72 0.717973
Target:  5'- cCGGAGCUCGC--GUCGACCgCG-GCGc -3'
miRNA:   3'- cGCCUUGAGCGacUAGCUGG-GCuCGU- -5'
10776 5' -55.7 NC_002794.1 + 54410 0.7 0.801578
Target:  5'- cGCGGAGCUCGCaGAUgugCGccACCUccuuGAGCAu -3'
miRNA:   3'- -CGCCUUGAGCGaCUA---GC--UGGG----CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 54999 0.66 0.941704
Target:  5'- gGCGGcGACUCGCcGggCGuccgccgccgcgccGCCgCGAGCAc -3'
miRNA:   3'- -CGCC-UUGAGCGaCuaGC--------------UGG-GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 68915 0.7 0.818755
Target:  5'- cGCGGGGCUCGCggcguccucGUCGcCCgCGGGCc -3'
miRNA:   3'- -CGCCUUGAGCGac-------UAGCuGG-GCUCGu -5'
10776 5' -55.7 NC_002794.1 + 71185 0.66 0.955377
Target:  5'- gGCGGAACa-GgaGAUCGACC--AGCGc -3'
miRNA:   3'- -CGCCUUGagCgaCUAGCUGGgcUCGU- -5'
10776 5' -55.7 NC_002794.1 + 74685 0.67 0.923446
Target:  5'- cGCGGAccgaACUCaucca-CGACCCGGGCAc -3'
miRNA:   3'- -CGCCU----UGAGcgacuaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 80317 0.71 0.727659
Target:  5'- cGUGGAACccUCGCUGAgCGGgcuCCUGAGCc -3'
miRNA:   3'- -CGCCUUG--AGCGACUaGCU---GGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 82761 0.66 0.959049
Target:  5'- cGCGG-ACUCGCUccgCGAaCCCucGCAa -3'
miRNA:   3'- -CGCCuUGAGCGAcuaGCU-GGGcuCGU- -5'
10776 5' -55.7 NC_002794.1 + 86098 0.67 0.928689
Target:  5'- cCGGGACggaUGCUc--CGGCCCGAGCc -3'
miRNA:   3'- cGCCUUGa--GCGAcuaGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 86290 0.67 0.928689
Target:  5'- cCGGGACggaUGCUc--CGGCCCGAGCc -3'
miRNA:   3'- cGCCUUGa--GCGAcuaGCUGGGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.